PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Zpz_sc00614.1.g00130.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 887aa MW: 96375.3 Da PI: 10.304 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 95.4 | 3.8e-30 | 580 | 677 | 1 | 92 |
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkeg 77 f+kv tpsdv+k++rlv+pk++ae++ + +e++ l++ed+ g+ W+++++y+++s++yv+tkGW++Fvk+++L++g Zpz_sc00614.1.g00130.1.am.mk 580 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldSAANEKGLLLSFEDRAGKLWRFRYSYWNSSQSYVMTKGWSRFVKEKRLDAG 660 89***************************955556889******************************************* PP -EEEEEE-.SS.SEE.. CS B3 78 DfvvFkld.gr.sefel 92 D+++F++ g+ + +l Zpz_sc00614.1.g00130.1.am.mk 661 DTITFSRGaGEaARDRL 677 ******65344455555 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.0E-40 | 570 | 686 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.19E-28 | 577 | 668 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.75E-25 | 578 | 667 | No hit | No description |
Pfam | PF02362 | 1.3E-27 | 580 | 683 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 14.24 | 580 | 685 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.1E-22 | 580 | 685 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009908 | Biological Process | flower development | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 887 aa Download sequence Send to blast |
MMEASWAVSS PHIEARCVGT ARSHACCTDH DQLINNTDTH GGREKKNTQR KQRLRPSSRP 60 VALAFSPHSS LGTRKHHYAA AHFRLASIAL RWSRRNPCRC VRSPNRRQLV GGLPFPFPCA 120 ALLSQLANDR TSGEGISMDT LVEGLSNPTR LFVSGKPHQD TSLLECFDRI GSSWCKYKHR 180 GFSPFDEGNT APGRNEQSRK PGVRKLARIC RAETFPAHIA CDHRLAPPSV RGICLRLRWA 240 TALVSRLIPH SRPPSHIMTR TSSHEPNQLI PSGPHPSPAF LQSYSYTLRP AVTFQESSRA 300 VPPSLTSPRV GTQPAFPQLS ASRSLAHFIQ ANEPTITTRS VSLPINLISL LAAASSDAHG 360 QCEARRADEA LRIPASRSAV STSSDLKLAE PNSLAYQHLL LVEVVAVERW KRSRYSLDRL 420 IADRSPASSA LSRPSERASN QTTGRARPSR TVASHRRGCR SARSPEGRGR DRGGGQKAAP 480 RREARVVDMD FSASSSRFSK EEDEEEEQEH EEEEDDEASP REIPFMTAAA VSTAAASSSS 540 PSASASASAL RSSDGAGASG SGGGGGGSDD VEVIEKEHMF DKVVTPSDVG KLNRLVIPKQ 600 HAEKYFPLDS AANEKGLLLS FEDRAGKLWR FRYSYWNSSQ SYVMTKGWSR FVKEKRLDAG 660 DTITFSRGAG EAARDRLFID WKRRADVSDP HRLPRIPLPM PPAASPYGPW GGGAGGFFMP 720 PAPPATLYEH HRLRQSLDFR NVNAAAPARQ LLFFGSAGMP PPGPMLPPPP PVHITVQPSP 780 AVTAGLPMVL ESVPLVNSPT AASKRLRLFG VNLDNPHPGG GESSHDANAL SLRMPGWQRP 840 SPLRLFELPH HQQNVAGAAG VESSAASSPS SSSSSKREAH SSLDLDL |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5os9_A | 2e-57 | 575 | 687 | 3 | 116 | B3 domain-containing transcription factor NGA1 |
5os9_B | 2e-57 | 575 | 687 | 3 | 116 | B3 domain-containing transcription factor NGA1 |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Zpz_sc00614.1.g00130.1.am.mk |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | KJ727694 | 0.0 | KJ727694.1 Zea mays clone pUT5633 ABI3VP1 transcription factor (ABI12) gene, partial cds. |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP583 | 37 | 168 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G46870.1 | 3e-63 | B3 family protein |