PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00614.1.g00130.1.am.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family B3
Protein Properties Length: 887aa    MW: 96375.3 Da    PI: 10.304
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00614.1.g00130.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B395.43.8e-30580677192
                                   EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT CS
                            B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkeg 77 
                                   f+kv tpsdv+k++rlv+pk++ae++    +  +e++  l++ed+ g+ W+++++y+++s++yv+tkGW++Fvk+++L++g
  Zpz_sc00614.1.g00130.1.am.mk 580 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldSAANEKGLLLSFEDRAGKLWRFRYSYWNSSQSYVMTKGWSRFVKEKRLDAG 660
                                   89***************************955556889******************************************* PP

                                   -EEEEEE-.SS.SEE.. CS
                            B3  78 DfvvFkld.gr.sefel 92 
                                   D+++F++  g+  + +l
  Zpz_sc00614.1.g00130.1.am.mk 661 DTITFSRGaGEaARDRL 677
                                   ******65344455555 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.0E-40570686IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.19E-28577668IPR015300DNA-binding pseudobarrel domain
CDDcd100171.75E-25578667No hitNo description
PfamPF023621.3E-27580683IPR003340B3 DNA binding domain
PROSITE profilePS5086314.24580685IPR003340B3 DNA binding domain
SMARTSM010191.1E-22580685IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009908Biological Processflower development
GO:0048366Biological Processleaf development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 887 aa     Download sequence    Send to blast
MMEASWAVSS PHIEARCVGT ARSHACCTDH DQLINNTDTH GGREKKNTQR KQRLRPSSRP  60
VALAFSPHSS LGTRKHHYAA AHFRLASIAL RWSRRNPCRC VRSPNRRQLV GGLPFPFPCA  120
ALLSQLANDR TSGEGISMDT LVEGLSNPTR LFVSGKPHQD TSLLECFDRI GSSWCKYKHR  180
GFSPFDEGNT APGRNEQSRK PGVRKLARIC RAETFPAHIA CDHRLAPPSV RGICLRLRWA  240
TALVSRLIPH SRPPSHIMTR TSSHEPNQLI PSGPHPSPAF LQSYSYTLRP AVTFQESSRA  300
VPPSLTSPRV GTQPAFPQLS ASRSLAHFIQ ANEPTITTRS VSLPINLISL LAAASSDAHG  360
QCEARRADEA LRIPASRSAV STSSDLKLAE PNSLAYQHLL LVEVVAVERW KRSRYSLDRL  420
IADRSPASSA LSRPSERASN QTTGRARPSR TVASHRRGCR SARSPEGRGR DRGGGQKAAP  480
RREARVVDMD FSASSSRFSK EEDEEEEQEH EEEEDDEASP REIPFMTAAA VSTAAASSSS  540
PSASASASAL RSSDGAGASG SGGGGGGSDD VEVIEKEHMF DKVVTPSDVG KLNRLVIPKQ  600
HAEKYFPLDS AANEKGLLLS FEDRAGKLWR FRYSYWNSSQ SYVMTKGWSR FVKEKRLDAG  660
DTITFSRGAG EAARDRLFID WKRRADVSDP HRLPRIPLPM PPAASPYGPW GGGAGGFFMP  720
PAPPATLYEH HRLRQSLDFR NVNAAAPARQ LLFFGSAGMP PPGPMLPPPP PVHITVQPSP  780
AVTAGLPMVL ESVPLVNSPT AASKRLRLFG VNLDNPHPGG GESSHDANAL SLRMPGWQRP  840
SPLRLFELPH HQQNVAGAAG VESSAASSPS SSSSSKREAH SSLDLDL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A2e-575756873116B3 domain-containing transcription factor NGA1
5os9_B2e-575756873116B3 domain-containing transcription factor NGA1
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00614.1.g00130.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7276940.0KJ727694.1 Zea mays clone pUT5633 ABI3VP1 transcription factor (ABI12) gene, partial cds.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58337168
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.13e-63B3 family protein