PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00609.1.g00230.1.sm.mkhc
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 341aa    MW: 36043.3 Da    PI: 9.511
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00609.1.g00230.1.sm.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH14.75.4e-05199244454
                                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                                     a n+  r RR+r+ +++  L++l+ +      +K + a++L +A  YI+ L
  Zpz_sc00609.1.g00230.1.sm.mkhc 199 ATNKKPRVRRERLGERIIALQQLVSPF-----GKSDTATVLHEALGYIRFL 244
                                     679999********************8.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.125195244IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-11199255IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-7201253IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-4201250IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.45E-4205249No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MEQFEPTWGS ARPRNKDERE NSRAKPSKKK LGNDESYVHY ASRSLEEEII TEAGGRGYLD  60
MVGLGDEDFF RGLSPISSSS VVSAVTTGST PATASSPTCV SYMGMAPRHH MLNFTGQEQY  120
NYDGNGPFGL QYNAGDHAIP VVVPQKSSPT TECSSSISSM SSSPTVTSIS AISSKKPQAF  180
KKKGARCGGQ RKAAAAAAAT NKKPRVRRER LGERIIALQQ LVSPFGKSDT ATVLHEALGY  240
IRFLHDQVQV LSSPYMNRLP GAGGRCRDGG GAAATAERPE EPGAVAGADL VHGSFCRRCH  300
SNGADLWSVA VPSGVTNATA SRLNKGAAAM LPGGGHNGRL D
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1262270GGRCRDGGG
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00609.1.g00230.1.sm.mkhc
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002466417.13e-80transcription factor bHLH123 isoform X1
TrEMBLA0A3L6TPW71e-83A0A3L6TPW7_PANMI; Uncharacterized protein
STRINGPavir.J02211.1.p1e-86(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP80822529
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19500.17e-23bHLH family protein