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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc00607.1.g00210.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | C2H2 | ||||||||
Protein Properties | Length: 329aa MW: 35676.9 Da PI: 12.1124 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17 | 1.7e-05 | 135 | 154 | 2 | 21 |
EETTTTEEESSHHHHHHHHH CS zf-C2H2 2 kCpdCgksFsrksnLkrHir 21 +C+ Cgk+F+++ L H+r Zpz_sc00607.1.g00210.1.am.mk 135 PCTECGKRFPSWKALFGHMR 154 5******************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 9.619 | 134 | 161 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0034 | 134 | 156 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 4.03E-9 | 135 | 156 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 7.5E-4 | 136 | 156 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF13912 | 3.1E-9 | 136 | 158 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 136 | 156 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 4.03E-9 | 236 | 263 | No hit | No description |
PROSITE profile | PS50157 | 9.39 | 241 | 263 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.58 | 241 | 263 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 1.3E-11 | 241 | 265 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 243 | 263 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048235 | Biological Process | pollen sperm cell differentiation | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 329 aa Download sequence Send to blast |
MHRRALHAAA AHIRGNRRDM MARAPYISAR PPPRTTSGPQ LPLHHAARRP PATSLARPWR 60 PTPCPILRSS RAQRRHLPLL RLHRRRHRYR RSTTRRSRWR XXPLPHARRP RHPPSADGAA 120 SFARVRSSPT GDTPPCTECG KRFPSWKALF GHMRCHPERQ WRGITPPPHF RVQGSTAADQ 180 FTAQEREVAT SLLMLSGAGT GKKSLLGSPR GRKESAAGTS ASSSSTTAPA AASSKCDADD 240 HKCSVCHKGF ATGQALGGHK RCHWEGASGE AVVTATSSNC SVLATSQEAT AATATALDLN 300 LAPPGTPSPR TTNDQGRSLN AVLDLKLGY |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc00607.1.g00210.1.am.mk |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU975188 | 3e-43 | EU975188.1 Zea mays clone 483820 nucleic acid binding protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022682354.1 | 1e-78 | zinc finger protein ZAT3 | ||||
TrEMBL | A0A3L6PLI4 | 2e-80 | A0A3L6PLI4_PANMI; Zinc finger protein ZAT3-like | ||||
STRING | Si004657m | 8e-76 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11612 | 21 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35280.1 | 1e-30 | C2H2-like zinc finger protein |