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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc00591.1.g00240.1.sm.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | bHLH | ||||||||
Protein Properties | Length: 298aa MW: 32129.4 Da PI: 8.2764 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 35.4 | 1.9e-11 | 104 | 173 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC..................TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkas...............kapskKlsKaeiLekAveYIksLq 55 +r+ah ++Er+RR+ +N+ ++ Lr l+P ++ ++ + + a+++ A++Y+k+L+ Zpz_sc00591.1.g00240.1.sm.mk 104 QRMAHIAVERNRRRLMNDHLASLRALIPASYiprysvimfvtnhatFEYVEQGDQATVVGGAIDYVKQLE 173 79***************************888************9988899999*************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 5.37E-13 | 95 | 182 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.71E-8 | 102 | 170 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 4.3E-13 | 102 | 176 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 13.795 | 103 | 172 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 7.3E-9 | 104 | 173 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.2E-7 | 109 | 178 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 298 aa Download sequence Send to blast |
MAVMEQWADQ QAASASAGTA RIPFLALLQS AVVDNNAADG CKRAAAADFD LLESCVTQAA 60 AVTVASSSTS ATKAESRRRK RPRPRPRAAP QQEKRKKPEE AESQRMAHIA VERNRRRLMN 120 DHLASLRALI PASYIPRYSV IMFVTNHATF EYVEQGDQAT VVGGAIDYVK QLEQQLLALQ 180 AEATARRGCR GSACAMATAA TSDGVFVSPQ YTSYSEARTG SRAAGVDVXX XXPGRLVRAV 240 AALEDLRLAV LHLNVTSVGR DAVVYCFNLK MEDGCEVATA DEVATVVHQI FAYAGTFC |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 76 | 86 | RRRKRPRPRPR |
2 | 78 | 84 | RKRPRPR |
3 | 78 | 96 | RKRPRPRPRAAPQQEKRKK |
4 | 79 | 83 | KRPRP |
5 | 104 | 115 | RMAHIAVERNRR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc00591.1.g00240.1.sm.mk |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK355470 | 5e-48 | AK355470.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1021A13. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025798239.1 | 5e-93 | transcription factor bHLH57-like | ||||
TrEMBL | A0A1D6PKX5 | 1e-103 | A0A1D6PKX5_MAIZE; Putative HLH DNA-binding domain superfamily protein | ||||
STRING | Si040271m | 9e-92 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7957 | 33 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46810.1 | 5e-31 | bHLH family protein |