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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc00591.1.g00110.1.sm.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | NAC | ||||||||
Protein Properties | Length: 676aa MW: 74958.1 Da PI: 5.7995 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 183.5 | 5.1e-57 | 6 | 133 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratk 79 lppGfrFhPtdeel+v+yLk+k++g+++el e+i+evd+yk+ePwdLp k + +++ ewyfFs+rd+ky++g+r+nratk Zpz_sc00591.1.g00110.1.sm.mk 6 LPPGFRFHPTDEELIVYYLKRKINGRQIEL-EIIPEVDLYKCEPWDLPeKsFLPSKDLEWYFFSPRDRKYPNGSRTNRATK 85 79****************************.99**************95334455777*********************** PP NAM 80 sgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 sgyWkatgkd++v s ++++vg+kktLv+y+grap+g++tdWvmheyrl Zpz_sc00591.1.g00110.1.sm.mk 86 SGYWKATGKDRNVNS-HRRAVGMKKTLVYYRGRAPHGSRTDWVMHEYRL 133 **************9.9999***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.57E-64 | 4 | 156 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 61.637 | 6 | 156 | IPR003441 | NAC domain |
Pfam | PF02365 | 9.2E-30 | 7 | 133 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 676 aa Download sequence Send to blast |
MAPVSLPPGF RFHPTDEELI VYYLKRKING RQIELEIIPE VDLYKCEPWD LPEKSFLPSK 60 DLEWYFFSPR DRKYPNGSRT NRATKSGYWK ATGKDRNVNS HRRAVGMKKT LVYYRGRAPH 120 GSRTDWVMHE YRLDERECET DTGLQDAYAL CRVFKKTAPG PKIIEHYGSV QHHIEQPQWT 180 ACNVDYRSPT LDLSCDVRGD DFESTSFSFP AEAPMDYTHG GFGMQMSASH EDGKWMQFLS 240 EDAFNATNPF FTNPASSSFS CIPSKVDVAL ECARLQHRLS LPPLEVEDFP HDVSLDTKTS 300 VLRSNPNEVD ILQQFLSVAS ASQELINGSS SSYAAEMWPG AGSRNVSTHY GNELSSLVEL 360 GVKAKVEADN FYHIEGCVGT SSSGFALKSG HVDEPVRLVE ISEMEEELKE EKKQVENLRG 420 VRLHNNDLGE IVVEGDESNP TECITQYPIT DTADNSGEAG HLTDPTDAGG GLDTAPIFSQ 480 SQPDDFAIGF DDVDNPSASF EPYEKVDVKH AGLFVSRVGA AKTFFHRVEP STKVSFHLSP 540 VASDVSKAIE KFHFPVNVTT KVSGRVSIFS KFKALIRDKF LMKPSYQRSI GSKEAAAGSE 600 LLNIVTLLLT PKEATGPAAE QELVMRKVMK PGSCSDGNSV WLPLSKGSKG ISSMFLSGKW 660 AFLTSALAIR SPGCNH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 7e-56 | 1 | 162 | 12 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 7e-56 | 1 | 162 | 12 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 7e-56 | 1 | 162 | 12 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 7e-56 | 1 | 162 | 12 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 9e-56 | 1 | 162 | 15 | 174 | NAC domain-containing protein 19 |
3swm_B | 9e-56 | 1 | 162 | 15 | 174 | NAC domain-containing protein 19 |
3swm_C | 9e-56 | 1 | 162 | 15 | 174 | NAC domain-containing protein 19 |
3swm_D | 9e-56 | 1 | 162 | 15 | 174 | NAC domain-containing protein 19 |
3swp_A | 9e-56 | 1 | 162 | 15 | 174 | NAC domain-containing protein 19 |
3swp_B | 9e-56 | 1 | 162 | 15 | 174 | NAC domain-containing protein 19 |
3swp_C | 9e-56 | 1 | 162 | 15 | 174 | NAC domain-containing protein 19 |
3swp_D | 9e-56 | 1 | 162 | 15 | 174 | NAC domain-containing protein 19 |
4dul_A | 7e-56 | 1 | 162 | 12 | 171 | NAC domain-containing protein 19 |
4dul_B | 7e-56 | 1 | 162 | 12 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00212 | DAP | Transfer from AT1G65910 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc00591.1.g00110.1.sm.mk |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002468623.1 | 0.0 | uncharacterized protein LOC8085734 | ||||
TrEMBL | K4A6N6 | 0.0 | K4A6N6_SETIT; Uncharacterized protein | ||||
STRING | Si034541m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6624 | 36 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G65910.1 | 1e-124 | NAC domain containing protein 28 |