PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00560.1.g00260.1.sm.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C2H2
Protein Properties Length: 353aa    MW: 38980 Da    PI: 8.604
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00560.1.g00260.1.sm.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.83.9e-052850123
                                  EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                                  y C+ C+k F r  nL+ H r H
  Zpz_sc00560.1.g00260.1.sm.mk 28 YICEVCHKGFQRDQNLQLHRRGH 50
                                  89*******************88 PP
2zf-C2H211.50.00095104126123
                                   EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                   +kC  C+k +  +s+ k H + +
  Zpz_sc00560.1.g00260.1.sm.mk 104 WKCDRCSKKYAVQSDWKAHTKIC 126
                                   58*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.6E-52750IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576677.63E-72750No hitNo description
PfamPF128740.012850No hitNo description
SMARTSM003550.0382850IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.7412850IPR007087Zinc finger, C2H2
PROSITE patternPS0002803050IPR007087Zinc finger, C2H2
SMARTSM00355476999IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.0E-492125IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576677.63E-799124No hitNo description
SMARTSM00355230104124IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MVHDIHLADP DVEIVALSPK TLLATNRYIC EVCHKGFQRD QNLQLHRRGH NLPWKLKQRS  60
STEAKKKVYV CPELTCPHHD ASRALGDLTG IKKHYSRKHG EKKWKCDRCS KKYAVQSDWK  120
AHTKICGTKE YRCDCGTNIL KDSFITHRAF CDALAEDNSR VNHTLATMVG SLHGQQQDIF  180
PQGVPNFNAS PADMISNLSS NDHNSDGHLR TLSPYALITR NTALFSNQIS QKDTGFALDG  240
SASGFPYMSM NSPYMSATAL LQKAAEMGAK TSHDPISPLL LKSFPSNVTT PRDHMDVSSG  300
SQGDSLGNSA ANSVGIKTAE DDVAYMSGRV PAKLSLEQPS RNSQYQDVKA LFC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C1e-28100162366Zinc finger protein JACKDAW
5b3h_F1e-28100162366Zinc finger protein JACKDAW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00560.1.g00260.1.sm.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF1848811e-151KF184881.1 Saccharum hybrid cultivar R570 clone BAC 172K24 complete sequence.
GenBankKF1849121e-151KF184912.1 Saccharum hybrid cultivar R570 clone BAC 254D06 complete sequence.
GenBankKF1849461e-151KF184946.1 Saccharum hybrid cultivar R570 clone BAC 166F02 complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025818794.10.0protein indeterminate-domain 2-like
TrEMBLA0A1E5VSU00.0A0A1E5VSU0_9POAL; Protein indeterminate-domain 2
STRINGPavir.Aa01904.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP114253240
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.11e-97indeterminate(ID)-domain 2