PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00560.1.g00100.1.sm.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family Trihelix
Protein Properties Length: 295aa    MW: 32621.2 Da    PI: 4.7976
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00560.1.g00100.1.sm.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix61.42.2e-1921812285
                      trihelix 22 rrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85
                                   ++++ +p+W++v++++r++g+er+++qC+++w+nl+++ykkike+e+   + +  + p f  +
  Zpz_sc00560.1.g00100.1.sm.mk 21 ASAAALEPKWAAVAEYCRRHGVERGAVQCRKRWSNLAGDYKKIKEWERAA-PAA--REPSFWAM 81
                                  4455679*****************************************86.333..24666666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.1E-92881No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0050777Biological Processnegative regulation of immune response
GO:0071219Biological Processcellular response to molecule of bacterial origin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MDWAYSCSLQ IQNRGAGEAS ASAAALEPKW AAVAEYCRRH GVERGAVQCR KRWSNLAGDY  60
KKIKEWERAA PAAREPSFWA MRNDARRERR LPGFFDREVY DILEGRGRAI LGGRAGRNAA  120
EEEVVEVVVP VEEEKEAGPA EPVFDSGRPA TEEALFSEEE EEEEEQPTAA ASPPPPTVVA  180
LPISEKPEAS RQQQRAEQGP SKDKQPEQST SKDAPAPQGG QKRPRTDEDT GEGTTDLQSK  240
LIQILDRNSR MVAAQLEAHN LNCQLDREQR KDQANSLVLV LGRLADALGR IADKL
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00288DAPTransfer from AT2G33550Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00560.1.g00100.1.sm.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025798066.11e-143trihelix transcription factor ASR3-like isoform X2
TrEMBLA0A3L6RWU91e-142A0A3L6RWU9_PANMI; Trihelix transcription factor ASR3-like
STRINGSi017674m1e-142(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39152648
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33550.12e-31Trihelix family protein