PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Zpz_sc00559.1.g00170.1.sm.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

C2H2

Protein Properties

Length: 183aa MW: 19800.8 Da PI: 8.3114

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc00559.1.g00170.1.sm.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.7	0.00078	43	65	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C++ F++ L H +H Zpz_sc00559.1.g00170.1.sm.mk 43 FVCKTCNRAFPSFQALGGHRASH 65 89**********99999998887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	2.49E-8	41	107	No hit	No description
Pfam	PF13912	2.9E-12	42	67	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.23	43	65	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	9.806	43	70	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	45	65	IPR007087	Zinc finger, C2H2
SMART	SM00355	5.1	85	107	IPR015880	Zinc finger, C2H2-like
Pfam	PF13912	1.2E-8	85	109	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	87	107	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010200	Biological Process	response to chitin
GO:0071289	Biological Process	cellular response to nickel ion
GO:2000280	Biological Process	regulation of root development
GO:0005634	Cellular Component	nucleus
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 183 aa Download sequence Send to blast
MKRFAVQEGE MARVLMLMSH GQRQDQPLPV TGRGDRRAPE RVFVCKTCNR AFPSFQALGG 60 HRASHKKPRL DVDGDDLALG KPKLHGCSVC GLEFAIGQAL GGHMRRHRAM TGGAMPPVIV 120 VDKKPDAVVD VRGDGVKRGL WLDLNHPPCD DAEAECGHIN AAAGITLHQF LDTGTMAVDC 180 LGY

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc00559.1.g00170.1.sm.mk

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU968333	1e-75	EU968333.1 Zea mays clone 319090 ZFP16-1 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025809105.1	3e-99	zinc finger protein ZAT12-like
TrEMBL	A0A2T7E796	6e-98	A0A2T7E796_9POAL; Uncharacterized protein
TrEMBL	A0A3L6T0T3	6e-98	A0A3L6T0T3_PANMI; Zinc finger protein ZAT12-like
STRING	Si023353m	3e-98	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP501	37	157

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G59820.1	4e-25	C2H2 family protein