PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc00547.1.g00130.1.am.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

Trihelix

Protein Properties

Length: 331aa MW: 35258.8 Da PI: 6.5405

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc00547.1.g00130.1.am.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	40.9	5.5e-13	23	124	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..............rergferspkqCkekwenlnkrykkikeg 67 +Wt++ + L+ea++ ++ +r+klk +W +++ + + ++p+qCk+k+e+++kry+++ + Zpz_sc00547.1.g00130.1.am.mk 23 EWTESGIARLLEAYEAKWLLRNRAKLKWSHWVDIAGEVsahcaedaaatgkpGGGNSAKTPNQCKNKIESMKKRYRAESAA 103 5*****************************9999999999****877777899***************999 PP trihelix 68 ekkr..tsessstcpyfdqle 86 + + ++ + ++++f +++ Zpz_sc00547.1.g00130.1.am.mk 104 AARAgpAAAAGPSWRFFARMD 124 8887455667789**9997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	5.2E-14	21	125	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 331 aa Download sequence Send to blast
MDGLPDGDAA PVASAAQPQK RDEWTESGIA RLLEAYEAKW LLRNRAKLKW SHWVDIAGEV 60 SAHCAEDAAA TGKPGGGNSA KTPNQCKNKI ESMKKRYRAE SAAAARAGPA AAAGPSWRFF 120 ARMDGLLKGP AGCSGQAQQV EPGNSIDLCA PAKAEVEAEA DFAAQLPDAG PGAFADLMNV 180 DANGSVPEKP EKVDNSVPKE SRAADSDANV SSPRSKVANE DAEEADKLCD LPKKRKTTEL 240 AIAKSIELLA SSFLKVEHAR MEMYRETERM RIEAEIKKGE MELKRAEIMA KTHLQIAKLF 300 AKRLKVGGGR TGGSSSVTAE VDTLTAKGED G

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc00547.1.g00130.1.am.mk

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC137592	1e-103	AC137592.2 Oryza sativa (Japonica cultiva-group) chromosome 9 BAC clone OSJNBa0035B22, complete sequence.
GenBank	AK068834	1e-103	AK068834.1 Oryza sativa Japonica Group cDNA clone:J013159M18, full insert sequence.
GenBank	AK103673	1e-103	AK103673.1 Oryza sativa Japonica Group cDNA clone:J033136A07, full insert sequence.
GenBank	AP005090	1e-103	AP005090.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:OJ1065_E04.
GenBank	AP014965	1e-103	AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025802935.1	1e-172	trihelix transcription factor ASIL1-like
TrEMBL	A0A0A9E152	1e-179	A0A0A9E152_ARUDO; Uncharacterized protein
STRING	Pavir.Ba01421.1.p	1e-177	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7333	33	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54390.1	1e-35	sequence-specific DNA binding transcription factors