PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

WRKY

Protein Properties

Length: 475aa MW: 50191.2 Da PI: 5.2068

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc00535.1.g00350.1.sm.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	97.6	7.9e-31	226	284	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers++dp++++itY++eHnh+ Zpz_sc00535.1.g00350.1.sm.mk 226 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCSARKQVERSRTDPNMLVITYTSEHNHP 284 699**********************998**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50811	32.925	220	286	IPR003657	WRKY domain
Gene3D	G3DSA:2.20.25.80	1.0E-30	223	286	IPR003657	WRKY domain
SuperFamily	SSF118290	3.4E-26	223	286	IPR003657	WRKY domain
SMART	SM00774	1.4E-37	225	285	IPR003657	WRKY domain
Pfam	PF03106	1.0E-25	227	284	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 475 aa Download sequence Send to blast
MCDYFLQRME GDQADGDLTD IVRAGGGVPG NAEVPSTVAE WQLQGEPRLC PPLPPSSEGY 60 AGSTGADVFG DPFFGLGDPF STDYSSGADF LDAMPDAMAK VGFDTAVGCG GGGSGQMLDM 120 SRKPILPRGV QMPAVGLLGP RMLPSPLSPP RAIRPYPPMG GDMVKLGITA GQMAGCAIDA 180 AVVGMQMSSP RSAGGIKRRK NQARKVICIP APTAAGARPT GEVVPSDLWA WRKYGQKPIK 240 GSPYPRGYYR CSSSKGCSAR KQVERSRTDP NMLVITYTSE HNHPWPTQRN ALAGSTRNHH 300 GKNGGSSSGS KSSQNEKQKQ PNVKEEESKD QATTAATTAS TITTTTSTSP VAAVKEEALA 360 QPAGPEALAR AIDATGAVDH NNMALMDHVF SESYKPMIPE TGQPDDFFSD LAELESDPMS 420 LIFSKEYMEA KPAGGDEDRA NEKAVSKDLD PFEMLDWSNT SSAGSSFEQA SGKIG

Sequence ? help Back to Top

Protein Sequence Length: 475 aa Download sequence Send to blast

MCDYFLQRME GDQADGDLTD IVRAGGGVPG NAEVPSTVAE WQLQGEPRLC PPLPPSSEGY  60
AGSTGADVFG DPFFGLGDPF STDYSSGADF LDAMPDAMAK VGFDTAVGCG GGGSGQMLDM  120
SRKPILPRGV QMPAVGLLGP RMLPSPLSPP RAIRPYPPMG GDMVKLGITA GQMAGCAIDA  180
AVVGMQMSSP RSAGGIKRRK NQARKVICIP APTAAGARPT GEVVPSDLWA WRKYGQKPIK  240
GSPYPRGYYR CSSSKGCSAR KQVERSRTDP NMLVITYTSE HNHPWPTQRN ALAGSTRNHH  300
GKNGGSSSGS KSSQNEKQKQ PNVKEEESKD QATTAATTAS TITTTTSTSP VAAVKEEALA  360
QPAGPEALAR AIDATGAVDH NNMALMDHVF SESYKPMIPE TGQPDDFFSD LAELESDPMS  420
LIFSKEYMEA KPAGGDEDRA NEKAVSKDLD PFEMLDWSNT SSAGSSFEQA SGKIG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5w3x_B	1e-24	200	287	2	80	Disease resistance protein RRS1
5w3x_D	1e-24	200	287	2	80	Disease resistance protein RRS1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc00535.1.g00350.1.sm.mk

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025825027.1	0.0	probable WRKY transcription factor 35
Swissprot	Q9SA80	7e-68	WRK14_ARATH; Probable WRKY transcription factor 14
TrEMBL	A0A1E5VDC2	0.0	A0A1E5VDC2_9POAL; Putative WRKY transcription factor 35
STRING	Si011735m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2592	38	88

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G34830.1	3e-60	WRKY DNA-binding protein 35

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]