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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Zpz_sc00521.1.g00010.1.am.mk |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family |
M-type_MADS |
Protein Properties |
Length: 86aa MW: 9688.09 Da PI: 10.828 |
Description |
M-type_MADS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Zpz_sc00521.1.g00010.1.am.mk | genome | ZGD | View Nucleic Acid |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SRF-TF | 91 | 6e-29 | 34 | 83 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
rienk+ rqvtf+kRrng+lKKA+ELS+LCdaeva+++fs+ g+ly +ss
Zpz_sc00521.1.g00010.1.am.mk 34 RIENKISRQVTFAKRRNGLLKKAYELSILCDAEVALVLFSHAGRLYQFSS 83
9***********************************************96 PP
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
1tqe_P | 3e-20 | 25 | 84 | 1 | 60 | Myocyte-specific enhancer factor 2B |
1tqe_Q | 3e-20 | 25 | 84 | 1 | 60 | Myocyte-specific enhancer factor 2B |
1tqe_R | 3e-20 | 25 | 84 | 1 | 60 | Myocyte-specific enhancer factor 2B |
1tqe_S | 3e-20 | 25 | 84 | 1 | 60 | Myocyte-specific enhancer factor 2B |
6c9l_A | 3e-20 | 25 | 84 | 1 | 60 | Myocyte-specific enhancer factor 2B |
6c9l_B | 3e-20 | 25 | 84 | 1 | 60 | Myocyte-specific enhancer factor 2B |
6c9l_C | 3e-20 | 25 | 84 | 1 | 60 | Myocyte-specific enhancer factor 2B |
6c9l_D | 3e-20 | 25 | 84 | 1 | 60 | Myocyte-specific enhancer factor 2B |
6c9l_E | 3e-20 | 25 | 84 | 1 | 60 | Myocyte-specific enhancer factor 2B |
6c9l_F | 3e-20 | 25 | 84 | 1 | 60 | Myocyte-specific enhancer factor 2B |
Search in ModeBase |
Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | BT042406 | 8e-90 | BT042406.1 Zea mays full-length cDNA clone ZM_BFb0221D10 mRNA, complete cds. |
GenBank | EU961799 | 8e-90 | EU961799.1 Zea mays clone 238290 MADS-box transcription factor 34 mRNA, complete cds. |
Publications
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- Kobayashi K,Maekawa M,Miyao A,Hirochika H,Kyozuka J
PANICLE PHYTOMER2 (PAP2), encoding a SEPALLATA subfamily MADS-box protein, positively controls spikelet meristem identity in rice. Plant Cell Physiol., 2010. 51(1): p. 47-57 [PMID:19933267] - Gao X, et al.
The SEPALLATA-like gene OsMADS34 is required for rice inflorescence and spikelet development. Plant Physiol., 2010. 153(2): p. 728-40 [PMID:20395452] - Khanday I,Yadav SR,Vijayraghavan U
Rice LHS1/OsMADS1 controls floret meristem specification by coordinated regulation of transcription factors and hormone signaling pathways. Plant Physiol., 2013. 161(4): p. 1970-83 [PMID:23449645] - Lin X, et al.
The pleiotropic SEPALLATA-like gene OsMADS34 reveals that the 'empty glumes' of rice (Oryza sativa) spikelets are in fact rudimentary lemmas. New Phytol., 2014. 202(2): p. 689-702 [PMID:24372518] - Conrad LJ, et al.
The polycomb group gene EMF2B is essential for maintenance of floral meristem determinacy in rice. Plant J., 2014. 80(5): p. 883-94 [PMID:25279942] - Liu M,Li H,Su Y,Li W,Shi C
G1/ELE Functions in the Development of Rice Lemmas in Addition to Determining Identities of Empty Glumes. Front Plant Sci, 2016. 7: p. 1006 [PMID:27462334]
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