PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00501.1.g00060.1.am.mkhc
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 456aa    MW: 48557.8 Da    PI: 8.8329
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00501.1.g00060.1.am.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH291.9e-09292339455
                                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                     +h+ +Er RR++i +++  L++l+P +    +k + Ka +L + ++Y++sLq
  Zpz_sc00501.1.g00060.1.am.mkhc 292 SHSLAERVRREKISQRMKLLQDLVPGC----NKVVVKAVMLDEIINYVQSLQ 339
                                     8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.44E-15286357IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.27E-10286343No hitNo description
PROSITE profilePS5088814.932288338IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-16290356IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-6292339IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.5E-10294344IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 456 aa     Download sequence    Send to blast
MNCGPPDQMP PATAPACFLN LNWDQSIATA GTAGEQHLDP ALSSMVSPPA SNSTPTAASD  60
GLALHGISPQ PQYGGTPLSS PPKLNLSMMV PFHHYPPPPQ VGGAGAAGLQ FLENLMPGHL  120
DQFLTDPGFA ERAARLSNFD GRAGGVGYGG SVPGQFSFPD AGPVGALKEL EFGNGRDESS  180
VSNPASASAE MALKGPSDGN ARKRKASGKG KGKDGPVSTS AKDLAKEESS GKRCKSGDES  240
NAAEENFTKG KAAQSSSENG GKKEGKNSTS KPPEPPKDYI HVRARRGEAT DSHSLAERVR  300
REKISQRMKL LQDLVPGCNK VVVKAVMLDE IINYVQSLQR QVEFLSMKLA TVNPQLDFNN  360
LPNFLAKDMQ QSCGLSENSH FPLETSGAPM PYISQPHQGN PLSCSLTNGM DNQSSMRPWG  420
LSGKMIFKVS FIWTWGKVRK WLPLPTATMV RCKQST
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00660PBMTransfer from Pp3c6_9520Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00501.1.g00060.1.am.mkhc
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004971039.10.0transcription factor bHLH77
TrEMBLA0A0A9QTY70.0A0A0A9QTY7_ARUDO; Uncharacterized protein
STRINGSi001242m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP91938137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.39e-53bHLH family protein