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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc00499.1.g00150.1.sm.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 673aa MW: 73313.8 Da PI: 7.819 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 64.9 | 1.1e-20 | 16 | 71 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 r++ +++t+ q+++Le++F+++++p++++r+ L+++lgL+ rq+k+WFqNrR+++k Zpz_sc00499.1.g00150.1.sm.mk 16 RKRYHRHTPRQIQQLEAMFKECPHPDENQRAALSRELGLEPRQIKFWFQNRRTQMK 71 688899***********************************************998 PP | |||||||
2 | START | 112.3 | 7.2e-36 | 209 | 362 | 71 | 205 |
CT-TT-S....EEEEEEEECTT.............EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-T CS START 71 qWdetla....kaetlevissg.............galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdse 133 +W e ++ ka t++v+ +g + ++m+ el ++p+vp R+f f+Ry++q ++g w+ivdvS+d + Zpz_sc00499.1.g00150.1.sm.mk 209 KWMEFFPgivsKAHTVDVLVNGmcgrnesvimglmVVSTQMYEELHIMTPVVPtREFCFLRYCKQIEQGLWAIVDVSTDGQ 289 67777777777999**************9999997777899***************************************9 PP TS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXX.HHHHHHHHHHHHHHHHHHHHHHTXXXXX CS START 134 qkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlp.hwllrslvksglaegaktwvatlqrqce 205 ++ + R+++lpSg+li +++ng+skvtwveh++ + lp l+r lv sg+a+ga +wva+lqr c Zpz_sc00499.1.g00150.1.sm.mk 290 REAHYGVPPSRSRRLPSGCLIADMANGYSKVTWVEHMEIEQMLPiNVLYRNLVLSGAAFGAHRWVAALQRACD 362 9998888889**********************************999***********************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.76E-20 | 9 | 76 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.7E-22 | 10 | 78 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.864 | 13 | 73 | IPR001356 | Homeobox domain |
SMART | SM00389 | 9.6E-20 | 14 | 77 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.99E-19 | 15 | 74 | No hit | No description |
Pfam | PF00046 | 3.6E-18 | 16 | 71 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 48 | 71 | IPR017970 | Homeobox, conserved site |
SMART | SM00234 | 1.3E-13 | 134 | 363 | IPR002913 | START domain |
Pfam | PF01852 | 2.1E-30 | 207 | 362 | IPR002913 | START domain |
CDD | cd08875 | 5.26E-68 | 208 | 361 | No hit | No description |
PROSITE profile | PS50848 | 31.17 | 209 | 366 | IPR002913 | START domain |
SuperFamily | SSF55961 | 8.1E-20 | 210 | 364 | No hit | No description |
Gene3D | G3DSA:3.30.530.20 | 2.1E-5 | 257 | 344 | IPR023393 | START-like domain |
SuperFamily | SSF55961 | 4.67E-7 | 383 | 488 | No hit | No description |
SuperFamily | SSF55961 | 4.67E-7 | 542 | 660 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 673 aa Download sequence Send to blast |
MDFGDEPEGS DSQRRRKRYH RHTPRQIQQL EAMFKECPHP DENQRAALSR ELGLEPRQIK 60 FWFQNRRTQM KAQHERADNC FLRAENDKIR CENITMSEAL KNVICPNCGG PPVAEDFFDE 120 QKLRMENARL KEELDRVSSI TSKYLGRPFT QMPPMPTMSA SSLDLSVGGM PGPAFGGPGL 180 DLDLLGGGSA GPGMCPSGLP CCFCLVQHKW MEFFPGIVSK AHTVDVLVNG MCGRNESVIM 240 GLMVVSTQMY EELHIMTPVV PTREFCFLRY CKQIEQGLWA IVDVSTDGQR EAHYGVPPSR 300 SRRLPSGCLI ADMANGYSKV TWVEHMEIEQ MLPINVLYRN LVLSGAAFGA HRWVAALQRA 360 CDRVASLAAL GVPHHDPSGV TAEGKRGMMK LSQRMVSCFC ASLTSSPLQL WTTLSGTTDV 420 SVRVSTYRSA DLGQHSGVVL GAAASIWLPV PSEHVFAFVR NERTRSQVHV HTYRVRSRRL 480 RHFINNARGG VDVVTTSSCR ATPLTDVSLT SPLLPQWDVL AHGNQVQEVS RITSGSNAGN 540 CISLLRGLNS SQNSRLILQE SCTDASGSMV VYSPIDLLAA NVVMSGEDPS GIPLLPSGFA 600 ILPDGRPGTG SGASSSAGPP LAPPPGCLVT VAFQIVVSSL PSSRLNEESV STINSLVTST 660 VQNIRAALNC TGP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc00499.1.g00150.1.sm.mk |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT066813 | 1e-180 | BT066813.2 Zea mays full-length cDNA clone ZM_BFb0073D09 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002438026.1 | 0.0 | homeobox-leucine zipper protein ROC8 | ||||
Swissprot | Q69T58 | 0.0 | ROC8_ORYSJ; Homeobox-leucine zipper protein ROC8 | ||||
TrEMBL | C5Z6D6 | 0.0 | C5Z6D6_SORBI; Uncharacterized protein | ||||
STRING | Sb10g006820.1 | 0.0 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2912 | 37 | 70 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G73360.1 | 1e-116 | homeodomain GLABROUS 11 |