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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc00468.1.g00110.1.sm.mkhc | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | NAC | ||||||||
Protein Properties | Length: 422aa MW: 47338.4 Da PI: 9.2278 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 114.1 | 1.4e-35 | 43 | 185 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......leleevikevd....iykvePwdLpkkvkaeekewyfFskrdkkya 69 lp+G++F+Ptd+el+ e+L++kv+++ +++ +i+++d i++++P++Lp v+ + + +fF++ +k+y+ Zpz_sc00468.1.g00110.1.sm.mkhc 43 LPAGVKFDPTDQELI-EHLEAKVREEGsrshplIDE--FIPTIDgedgICYTHPEKLP-GVTRDGLSKHFFHRPSKAYT 117 799************.99******999667544333..3444433445**********.555666799*********** PP NAM 70 tgkrknra........tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 tg+rk+r+ + +W++tgk+++v++ +g+++g+kk+Lv+y g+++k+ekt+Wvmh+y+l Zpz_sc00468.1.g00110.1.sm.mkhc 118 TGTRKRRKiqmecdvhKGETRWHKTGKTRPVMV-NGRQKGCKKILVLYtnFGKHRKPEKTNWVMHQYHL 185 *******85677765444778************.999***********5547999999*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.57E-39 | 37 | 204 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 34.234 | 43 | 204 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.5E-16 | 44 | 185 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 422 aa Download sequence Send to blast |
MNRPHISSSK LINEKLEEHQ ISTAKHCPNC HHKIDSKPDW VGLPAGVKFD PTDQELIEHL 60 EAKVREEGSR SHPLIDEFIP TIDGEDGICY THPEKLPGVT RDGLSKHFFH RPSKAYTTGT 120 RKRRKIQMEC DVHKGETRWH KTGKTRPVMV NGRQKGCKKI LVLYTNFGKH RKPEKTNWVM 180 HQYHLGDLEE EKEGELVVCK IFYQTQPRQC SWSSDRGAAS AAAVTTVQEQ RRRDSGSGSC 240 SSRDHEVSAT SFPTSGYTVT AAAVDMQQHL KNPADHFSFA PFRKSFDQEV GIGGDQVPSD 300 QLGRPSDQQH HAGGQEQQQP HRPVIATTAV PATAFLISRP SNPVSAIVPP AMQHASVVLD 360 HDQFHVPAIL LHHHDKFQDE KLHVVMQART VQFLTPRRQN GLTRTGHLTT KIIMGSSNKA 420 GK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 4e-12 | 41 | 185 | 13 | 140 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269|PubMed:25265867, ECO:0000269|PubMed:25535195}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc00468.1.g00110.1.sm.mkhc |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KM017005 | 0.0 | KM017005.1 UNVERIFIED: Miscanthus lutarioriparius NAC7-like mRNA, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025818124.1 | 0.0 | NAC domain-containing protein 75-like isoform X2 | ||||
Swissprot | Q9M0F8 | 1e-130 | NAC75_ARATH; NAC domain-containing protein 75 | ||||
TrEMBL | A0A1E5VUT4 | 0.0 | A0A1E5VUT4_9POAL; NAC domain-containing protein 73 | ||||
STRING | GRMZM2G166721_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1453 | 38 | 117 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G29230.1 | 1e-117 | NAC domain containing protein 75 |
Publications ? help Back to Top | |||
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