PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc00465.1.g00160.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | B3 | ||||||||
Protein Properties | Length: 172aa MW: 18114.6 Da PI: 8.8548 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 42.7 | 1e-13 | 92 | 143 | 43 | 94 |
S-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE..EE CS B3 43 grsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sefelvv 94 grsW++++ +++++ l++GW++F+++ngL+ gD +vF+l+ g ++++ ++ Zpz_sc00465.1.g00160.1.am.mk 92 GRSWDMRF--TGGRQFLRLEAGWRGFAQDNGLRLGDGCVFELVdGAaEGGTVKF 143 8*******..*******************************8846667775444 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.6E-16 | 50 | 151 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.14E-16 | 50 | 151 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.70E-14 | 52 | 149 | No hit | No description |
PROSITE profile | PS50863 | 12.435 | 54 | 151 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 0.0028 | 58 | 151 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 5.7E-11 | 62 | 142 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 172 aa Download sequence Send to blast |
MSCNAGTSKG KAAVNSAEKS GEAAVGPATG PDSLPVSGKK CAERIQPLSG KPYFSCIVCK 60 SHVQPPFQVV VPRSVAPFLP PRTAPATLTW CGRSWDMRFT GGRQFLRLEA GWRGFAQDNG 120 LRLGDGCVFE LVDGAAEGGT VKFSVQVLRA DVPSAIRERA GGYTSSSPIE ID |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc00465.1.g00160.1.am.mk |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004975400.1 | 5e-71 | B3 domain-containing protein Os04g0386900 | ||||
Swissprot | Q7XLP4 | 6e-63 | Y4869_ORYSJ; B3 domain-containing protein Os04g0386900 | ||||
TrEMBL | A0A0A9HBU5 | 4e-83 | A0A0A9HBU5_ARUDO; Uncharacterized protein | ||||
STRING | MLOC_48372.1 | 1e-67 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8954 | 35 | 45 |
Publications ? help Back to Top | |||
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