PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00459.1.g00330.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C2H2
Protein Properties Length: 691aa    MW: 73516 Da    PI: 10.1764
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00459.1.g00330.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.91.7e-05188210123
                                   EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                   ++C+ C+k F r  nL+ H r H
  Zpz_sc00459.1.g00330.1.am.mk 188 FVCEVCNKGFQREQNLQLHRRGH 210
                                   89*******************88 PP
2zf-C2H212.80.00035264286123
                                   EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                   +kC +C+k++  +s+ k H +t+
  Zpz_sc00459.1.g00330.1.am.mk 264 WKCDKCNKRYAVQSDWKAHSKTC 286
                                   58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.77E-7187210No hitNo description
Gene3DG3DSA:3.30.160.609.8E-6187210IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF121714.6E-5188210IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015711.094188210IPR007087Zinc finger, C2H2
SMARTSM003550.0041188210IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280190210IPR007087Zinc finger, C2H2
SMARTSM00355300229259IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.605.2E-5252285IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.77E-7259284No hitNo description
SMARTSM00355110264284IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 691 aa     Download sequence    Send to blast
MDRPAANLTS SQISLPTDRV RAAATAAAWA LREETGGEAN SHGQGMVKGM SIFQVVPGRG  60
STVQVTVLVL PLASEISHPA TLGIWIESGR LLVSKEHTLP LRHLDSSQID RDRWRLPLRP  120
RTCSDSATRR CSRCRCSRPR LLLLRRRTTP QQPRRRPRRR GISPATQANP DAEVIALSPK  180
TLLATNRFVC EVCNKGFQRE QNLQLHRRGH NLPWKLKQKN PKETRRKVYL CPEPTCVHHD  240
PSRALGDLTG IKKHYCRKHG EKKWKCDKCN KRYAVQSDWK AHSKTCGTRE YRCDCGTLFS  300
RCSSILFIVV SLQYCHTTLV PCSSMQQPEM LPVAKLLRDS FITHRAFCDA LAQESARLPP  360
IGAGMYGSGG MALGLSGMAA SQLQSAFQDH AHSSGATAMG ANAAGQFELL MPSSAGTQAF  420
RGAHPTSSSA SPFYLGGGED GHQGQAGHTS LLNGKPAFHG LMQLPEQHQQ ANNGLLNLGF  480
FSGATSVQQD ARLVFPDQFN GSAAGNGRGD GGEHGNSSAG HESGAIFSGN LMGNQMAAGA  540
GFSSSLYNNS SETVAPPQMS ATALLQKAAQ MGATTSGGGG GSVNSLLRGL GSGGALNGKP  600
AGAAGFMAGE NSSSRSTSQA ENESQFRDMM NSLAASGNGA FSSGFPGVDD GKLSTRDFLG  660
VGGRNMNGAA RLQLRHGAAG IGMGSLDPEM K
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-27260358365Zinc finger protein JACKDAW
5b3h_F2e-27260358365Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1154159RRPRRR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00255DAPTransfer from AT2G02070Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00459.1.g00330.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY7548651e-162AY754865.1 Zea mays INDETERMINATE-related protein 7 mRNA, complete cds.
GenBankFP1011441e-162FP101144.1 Phyllostachys edulis cDNA clone: bphyem208d18, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008648994.10.0uncharacterized protein LOC542697 isoform X5
RefseqXP_008649003.10.0uncharacterized protein LOC542697 isoform X5
RefseqXP_020396172.10.0uncharacterized protein LOC542697 isoform X5
TrEMBLA0A3L6PM370.0A0A3L6PM37_PANMI; INDETERMINATE-related protein 1
STRINGPavir.Fb02381.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20238320
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02080.11e-100indeterminate(ID)-domain 4