PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00450.1.g00010.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GRAS
Protein Properties Length: 326aa    MW: 35889.8 Da    PI: 9.7664
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00450.1.g00010.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS1372e-427026427221
                          GRAS  27 lselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn.sseelaalklfsevsPilkfshltaNqaIleav 106
                                   +s  a p gd ++R+a+ f+eALa+r +r  ++l+ a++ +  +  +  +   aa++ f  ++P+++++ ++ N+aIl a+
  Zpz_sc00450.1.g00010.1.am.mk  70 VSSVACPLGDHLKRVAFTFAEALAHRAMRLLPGLAWAMQLQVPPLPTtPAAINAARRSFAALCPLVRVAAMAVNHAILGAM 150
                                   56778999***************************99976665544416666677888*********************** PP

                          GRAS 107 egeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvl..vakr 185
                                   + e++vHi+D++  ++ QW  L++ +a+R++gppslR+Tgv++    + + l++++  L++ A +lgv+f fn++  + ++
  Zpz_sc00450.1.g00010.1.am.mk 151 AAERAVHIVDLGGANPNQWFELIRLFAARSRGPPSLRLTGVNE----EDDFLSSVAGLLTQEAVRLGVNFMFNPVrsHIDH 227
                                   *******************************************....99*************************8666667 PP

                          GRAS 186 ledleleeLrvkp.gEalaVnlvlqlhrlldesvsle 221
                                   ++  ++ +Lrv + +Eal++ + lqlhrl +++v+++
  Zpz_sc00450.1.g00010.1.am.mk 228 FTPADVAALRVVQgREALVITSTLQLHRLIADEVTIN 264
                                   777799999999999***************8887765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098523.2826326IPR005202Transcription factor GRAS
PfamPF035146.8E-4070264IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MNPEGSNNNK GKAVVVKEEP SSLPMLVDAV HLRLFLRLCQ RPLWRTSLDP TNMHVIMYCV  60
AALDMGNVSV SSVACPLGDH LKRVAFTFAE ALAHRAMRLL PGLAWAMQLQ VPPLPTTPAA  120
INAARRSFAA LCPLVRVAAM AVNHAILGAM AAERAVHIVD LGGANPNQWF ELIRLFAARS  180
RGPPSLRLTG VNEEDDFLSS VAGLLTQEAV RLGVNFMFNP VRSHIDHFTP ADVAALRVVQ  240
GREALVITST LQLHRLIADE VTINLPVVAE NNMITKADAL LRVLRDQKLK LVSSWHERGG  300
DGSWYVGSEV VVVTVAMSRA RWWWRW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A2e-156824742216Protein SCARECROW
5b3h_D2e-156824742216Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00450.1.g00010.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025806761.12e-72scarecrow-like protein 3
TrEMBLA0A368QJM92e-76A0A368QJM9_SETIT; Uncharacterized protein
TrEMBLK3ZDF11e-75K3ZDF1_SETIT; Uncharacterized protein
STRINGSi024587m2e-76(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP137161330
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.19e-34scarecrow-like 3