PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00433.1.g00340.1.sm.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family HD-ZIP
Protein Properties Length: 293aa    MW: 31800.5 Da    PI: 4.6269
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00433.1.g00340.1.sm.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox598e-1987142256
                                   T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                      Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                                   r+++++t+eq+++Le  Fe+ +r++  e++ eLA++lg+  rqV vWFqNrRa+++
  Zpz_sc00433.1.g00340.1.sm.mk  87 RTKRRLTAEQVQALEVSFEEeKRKLEPERKSELARRLGIAPRQVAVWFQNRRARWR 142
                                   77889**************98**********************************9 PP
2HD-ZIP_I/II118.83e-3888179292
                   HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeee.kLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLe 81 
                                    krrl++eqv++LE sFeee+ kLeperK+elar+Lg+ prqvavWFqnrRAR++tkqlE+d+++L++a+d+l + +++L 
  Zpz_sc00433.1.g00340.1.sm.mk  88 TKRRLTAEQVQALEVSFEEEKrKLEPERKSELARRLGIAPRQVAVWFQNRRARWRTKQLEQDFDRLRAAHDELLAGRDALV 168
                                   69****************9999*********************************************************** PP

                   HD-ZIP_I/II  82 keveeLreelk 92 
                                   +++++Lr+++ 
  Zpz_sc00433.1.g00340.1.sm.mk 169 ADNDRLRSQVI 179
                                   *******9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.51E-1778146IPR009057Homeodomain-like
PROSITE profilePS5007117.81583144IPR001356Homeobox domain
SMARTSM003891.1E-1685148IPR001356Homeobox domain
PfamPF000463.9E-1687142IPR001356Homeobox domain
CDDcd000861.01E-1687145No hitNo description
Gene3DG3DSA:1.10.10.604.0E-1993143IPR009057Homeodomain-like
PRINTSPR000313.0E-6115124IPR000047Helix-turn-helix motif
PROSITE patternPS000270119142IPR017970Homeobox, conserved site
PRINTSPR000313.0E-6124140IPR000047Helix-turn-helix motif
PfamPF021834.7E-14144186IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MDSGRLMISS AAAPFCSAVA GGSQVLQFGG GFRGGTSMAA AVAENGRRKR PFFTPHEALQ  60
LELGLDIMDD VDQLCGFEYE LQGAPERTKR RLTAEQVQAL EVSFEEEKRK LEPERKSELA  120
RRLGIAPRQV AVWFQNRRAR WRTKQLEQDF DRLRAAHDEL LAGRDALVAD NDRLRSQVIR  180
LTEKLQAKEP PATQAEEQSA PIPSGPADNT AMQAAAPSSA GSYFAAGAPS PPSSSEGDCG  240
GDEGSALFLP ADAMLLAAVE QGRGLGAEED SWEWFWNSES PVLSECVLGT YSK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00433.1.g00340.1.sm.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3568508e-90AK356850.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1041A16.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002462311.13e-83homeobox-leucine zipper protein HOX25
SwissprotA3BYC11e-69HOX25_ORYSJ; Homeobox-leucine zipper protein HOX25
TrEMBLC5XBF67e-82C5XBF6_SORBI; Uncharacterized protein
STRINGSb02g023650.11e-82(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP127562735
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.13e-34homeobox 1