PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00428.1.g00100.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family WRKY
Protein Properties Length: 397aa    MW: 43330.5 Da    PI: 11.3136
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00428.1.g00100.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY50.54e-16217245230
                                   --SS-EEEEEEE--TT-SS-EEEEEE-ST CS
                          WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa 30 
                                   dDg++WrKYGqK++ g+++pr+YYrCt++
  Zpz_sc00428.1.g00100.1.am.mk 217 DDGHSWRKYGQKDILGARHPRAYYRCTHR 245
                                   8**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.4E-14205246IPR003657WRKY domain
PROSITE profilePS5081113.838211243IPR003657WRKY domain
SuperFamilySSF1182902.62E-13214245IPR003657WRKY domain
SMARTSM007742.2E-10216261IPR003657WRKY domain
PfamPF031065.5E-13217246IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
MVLSSGKHVF VYSSDAQTGM KIGLVCPRTP VDGQASTLPD SGQGRREPVG RETSKDRGTS  60
PRFNPARNEA ASSALRPPHL TTTTSSFLPS SSSSRSNSSS SPTTPGIEPS TTSLAAMDGA  120
SVQQQQLVAE LCHVQDLLRE LDLHLHSPSS YSVDQRRRGD RRAHRPFHRH GRRRRAPVRP  180
VRSATPAPAR YGAVATARWS GQVRVSCSAG AAKGPADDGH SWRKYGQKDI LGARHPRAYY  240
RCTHRQLAGV PGHQASAAHR QRPRRLRRRL PRRAHPQARC PRRQEDAAVQ RARRGLTVAT  300
TDAAVLPMTP ESYPPRGAPS PWSLASPVGS DSNTVYPCPV NWPLDGNLQE VVSAFAVRSG  360
GAHQTALDPE IMRPEYLGNF DYQSFDIGAL ETMQSLF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1155174RRRGDRRAHRPFHRHGRRRR
2164174RPFHRHGRRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00428.1.g00100.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP1000402e-50FP100040.1 Phyllostachys edulis cDNA clone: bphylf040n24, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A368RL202e-41A0A368RL20_SETIT; Uncharacterized protein
STRINGSi015433m3e-42(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23810.18e-16WRKY family protein