PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00425.1.g00350.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GRAS
Protein Properties Length: 473aa    MW: 52167 Da    PI: 4.4845
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00425.1.g00350.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS199.71.7e-611004632372
                          GRAS   2 velLlecAeavssgdlelaqalLarlsel.....aspdgdpmqRlaayfteALaarlarsvselykalppsetseknssee 77 
                                    +lLl+ Aeav+ +d +la+a+L++l +l      +++  +++ la +f+++L++++++     y  + p+e +   +s +
  Zpz_sc00425.1.g00350.1.am.mk 100 SDLLLTGAEAVEIRDSSLASAVLSKLDHLlpdicENEANGSLHHLAYHFAQGLHHQMSG----AYTPCYPQELP---QSGV 173
                                   689*************************988875566669******************9....66666677777...6778 PP

                          GRAS  78 laalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg.skee 157
                                   ++a+ + +e sP++kf+h+t+NqaIl+a+  +  vH++Df+i +G+QW++++  L+   +g  s+ +T+v   +sg s ++
  Zpz_sc00425.1.g00350.1.am.mk 174 MSAHLMIQEFSPFVKFAHFTTNQAILDATMDDMDVHVVDFNIAEGVQWASFMSDLSR--HGDKSFHLTAVIIDDSGySDNT 252
                                   8888889************************************************98..5778999***999888899999 PP

                          GRAS 158 leetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkv 238
                                     +t  rL++fAe+l +pf++n+l ++   dl  ++++ + + ++++++     +l     sl++ +  ++ +vk+l+Pk+
  Zpz_sc00425.1.g00350.1.am.mk 253 CYTTVLRLSEFAESLSLPFKYNFLRVHYAGDL--DDFSRNCEGSVIISCDT--TNLCYT--SLSKLQILLIGCVKKLQPKL 327
                                   ***********************955555555..88888889999999987..444433..344444699*********** PP

                          GRAS 239 vvvveqe.......adhnsesFlerflealeyysalfdsleaklpres..eerikvErellgreivnvvacegaerrerhe 310
                                   vv++e+e       a+++++sF+e f+e l+++++lf+sl++ +   +     + vEr ++g++i++ v + g+e      
  Zpz_sc00425.1.g00350.1.am.mk 328 VVIAEEElvrmgkeASLSHASFVEFFFEGLHHFTVLFESLASCFNGGDdkVCLRLVERDVVGPKIQDFVGQHGSE------ 402
                                   *****996554444555666********************888766663466789*******************9...... PP

                          GRAS 311 tlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSa 372
                                   tl+    +    GF + +ls  + +qa+ll   ++ + + v +e+g l l+Wk+rpLvsvS+
  Zpz_sc00425.1.g00350.1.am.mk 403 TLKAAAGANVLEGFMSCELSACNIAQARLLAGLFS-RSFGVAHEKGRLQLCWKSRPLVSVSV 463
                                   444445555667***********************.66***********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098529.57773446IPR005202Transcription factor GRAS
PfamPF035146.0E-59100463IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 473 aa     Download sequence    Send to blast
MMSYPCSPLL SFLPQEVGTD SLWSPHVALH DNATAADLSP IQLDDREFVD DTVGIDSSVF  60
HEQYCFDADA FANCDVRFLS EEGNNLAAIQ EELMEDSSLS DLLLTGAEAV EIRDSSLASA  120
VLSKLDHLLP DICENEANGS LHHLAYHFAQ GLHHQMSGAY TPCYPQELPQ SGVMSAHLMI  180
QEFSPFVKFA HFTTNQAILD ATMDDMDVHV VDFNIAEGVQ WASFMSDLSR HGDKSFHLTA  240
VIIDDSGYSD NTCYTTVLRL SEFAESLSLP FKYNFLRVHY AGDLDDFSRN CEGSVIISCD  300
TTNLCYTSLS KLQILLIGCV KKLQPKLVVI AEEELVRMGK EASLSHASFV EFFFEGLHHF  360
TVLFESLASC FNGGDDKVCL RLVERDVVGP KIQDFVGQHG SETLKAAAGA NVLEGFMSCE  420
LSACNIAQAR LLAGLFSRSF GVAHEKGRLQ LCWKSRPLVS VSVYTPVPKE NIL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-2814046655380Protein SCARECROW
5b3h_A1e-2814046654379Protein SCARECROW
5b3h_D1e-2814046654379Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00425.1.g00350.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021317590.10.0uncharacterized protein LOC8070665
RefseqXP_025826871.10.0nodulation-signaling pathway 2 protein-like
TrEMBLA0A2S3ICH50.0A0A2S3ICH5_9POAL; Uncharacterized protein
TrEMBLA0A2T7CK870.0A0A2T7CK87_9POAL; Uncharacterized protein
STRINGSb05g003820.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP76843250
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.11e-34GRAS family protein