 |
Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Zpz_sc00418.1.g00380.1.sm.mk |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
|
| Family |
C2H2 |
| Protein Properties |
Length: 318aa MW: 33301.6 Da PI: 7.849 |
| Description |
C2H2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Zpz_sc00418.1.g00380.1.sm.mk | genome | ZGD | View Nucleic Acid |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 11.5 | 0.00095 | 129 | 151 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
y+C C+k+F++ L H +H
Zpz_sc00418.1.g00380.1.sm.mk 129 YECRTCNKCFPTFQALGGHRASH 151
99**********99999998887 PP
|
| 2 | zf-C2H2 | 11.8 | 0.00072 | 222 | 244 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
++C++Cg F + L H+r+H
Zpz_sc00418.1.g00380.1.sm.mk 222 HECSICGAEFASGQALGGHMRRH 244
78********************9 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 318 aa
Download sequence Send
to blast |
MQAEGESKLA PTSSTEHSGE LDRHQPLAGA VVKRKRTKRP RHLPPASSAS SSESTTTEEE 60
DMAHCLILLA QGGAGAVVDS KPASAPQPQP PVVPRQAPPP AVKSERYTSR KYTEAATTAD 120
GVKAGFYVYE CRTCNKCFPT FQALGGHRAS HKKPRLPAGD QEEIASAISN KPSPATMTTA 180
SPPPIPPPRI DIVAVFPDVT TALSLNSHVT AGSGGGEKLR VHECSICGAE FASGQALGGH 240
MRRHRPLNAP VTAITTMDTK KEGSGASINL ELDLNLPAPS DVEEAVSLPP VALGLGQFND 300
GKKAGLMLTA SALVDCHY
|
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AP003989 | 1e-67 | AP003989.4 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1063_D06. |
| GenBank | AP004026 | 1e-67 | AP004026.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1136_C04. |
| GenBank | AP014958 | 1e-67 | AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence. |
| GenBank | CP012610 | 1e-67 | CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence. |
