PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Zpz_sc00412.1.g00090.1.sm.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

C2H2

Protein Properties

Length: 340aa MW: 36431.6 Da PI: 6.6233

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc00412.1.g00090.1.sm.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.7	0.00019	156	178	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +Cg++F r +L H r H Zpz_sc00412.1.g00090.1.sm.mk 156 HKCDICGRVFARGVQLGGHKRAH 178 79**************9999988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	2.99E-6	152	183	No hit	No description
Pfam	PF13912	1.6E-8	156	180	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	7.0E-5	156	182	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	12.487	156	183	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	158	178	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 340 aa Download sequence Send to blast
MDPSSSSSRR HRRGADGDAE DIEEGEYVPG EPSSSSDTDG DFHRYSLQSR PRAGETGPPQ 60 PSRTLEEIYA KGKEVMPPSP SPSSVGETDD TISDAFGRCN LPFLVPARTN RDNSAERSSP 120 PSVQNEPATS VANSSNNIAK PAARKKKMQL MQEQGHKCDI CGRVFARGVQ LGGHKRAHYG 180 KKIEYKKRKK QCVEPPPQLV DPPAPLAAPA TAVCMTDLTR SMDMQTGQPS HSSPPPQVVA 240 PPAPLASPAA VCMVDPTGNQ TEQPSDSSPQ PAVTILRLFG TNIMPGAPAV QEGNGIMPQA 300 EAPEEGSGAT EDLPSTRRQS LNIYHAYGFC LRKVQITQDN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	185	189	KKRKK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc00412.1.g00090.1.sm.mk

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP33219	3	4