PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00403.1.g00250.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C2H2
Protein Properties Length: 778aa    MW: 81871 Da    PI: 8.0669
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00403.1.g00250.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.50.00092293314223
                                   EETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                                   +Cp Cgk+F +   ++ H+r+H
  Zpz_sc00403.1.g00250.1.am.mk 293 TCPECGKTFLSDKAMHGHLRSH 314
                                   8*******************99 PP
2zf-C2H214.69.5e-05597619123
                                   EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                   ++C +CgksF+++  L  Hi  H
  Zpz_sc00403.1.g00250.1.am.mk 597 HECVICGKSFPTHQALGGHIAAH 619
                                   78**************9999877 PP
3zf-C2H212.30.00051723745123
                                   EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                   ++C+dC++sF++   L  H r+H
  Zpz_sc00403.1.g00250.1.am.mk 723 HVCSDCNMSFRSGQALGGHKRKH 745
                                   79*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.01292314IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.3E-7292314No hitNo description
PROSITE profilePS5015710.367292314IPR007087Zinc finger, C2H2
PROSITE patternPS000280294314IPR007087Zinc finger, C2H2
PfamPF139122.3E-4294316IPR007087Zinc finger, C2H2
SuperFamilySSF576671.3E-7592619No hitNo description
PfamPF139128.1E-7597620IPR007087Zinc finger, C2H2
PROSITE profilePS501579.556597624IPR007087Zinc finger, C2H2
SMARTSM003550.058597619IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280599619IPR007087Zinc finger, C2H2
PfamPF139121.1E-8723746IPR007087Zinc finger, C2H2
PROSITE profilePS501579.12723745IPR007087Zinc finger, C2H2
SMARTSM003550.095723745IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280725745IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 778 aa     Download sequence    Send to blast
MDGTRISFLL ASQPHHRVIW ASVSSQSAPF TLQQRSNGDC CLLVARSRFL DALRARGLWR  60
LLLHNNTRPS SIPPPSSSAS SGGEIGSSPH PSPGQPASRT PVVSASVAVA ARFCAEAAST  120
CSRSCIRARG PVFVVGGVFH SAVFFLAVPR VLLGGGSISA NQPCDIQLFF SDLRHTLRCD  180
ASRFCGKDPW KAKQATAQHD SSLISTSPTV STMDLTTFYA QATEAAAPSV HAGDEDVLVG  240
LTTDEAALLK LVVQTSGLGN GPASRKGSGL SQLAVGNADE AGEGRGGGGR DLTCPECGKT  300
FLSDKAMHGH LRSHPDRGYK GATRPAATAS LTAVAGDKKR TKKRKEPQKE AGASPATNIS  360
DTHAAAGEKK QTDEGELWGK WAVTAKRGRS SSTPSSTGSA SAPAAAQSSS WCSEDEEAAL  420
ILLEIASGCG PTSETQQSPQ PVNTRDAKHQ IPEVDEQPML LGHVAQNQMP EGPEPPQLMT  480
PDHVATCTVM AHQTPDAVQQ IVQLELSPEF IIVESQMTEV KELAKQLEIP TKAVVDVVRA  540
TDTFANQQPA APDRGAKKRK KRRLSDSEQT PETASPEFAI VKTPERRIPS PASDKKHECV  600
ICGKSFPTHQ ALGGHIAAHN KSGSKHGARY DDLVVTEAIQ KILANRKKST KAIIGGCMGA  660
AEASFAGAGA VGIGVQVQGG PVACLGHECP VAGGVQEGPV AGAAEERHDV QPPLHVPKSS  720
AQHVCSDCNM SFRSGQALGG HKRKHWFREK QARAALAAAS LNFDLNEMPN DVDGENQS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1556560KKRKK
2556562KKRKKRR
3556563KKRKKRRL
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00403.1.g00250.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP144001425
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56200.14e-06C2H2 family protein