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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc00399.1.g00170.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | C2H2 | ||||||||
Protein Properties | Length: 131aa MW: 14165.1 Da PI: 7.0283 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16.2 | 3e-05 | 24 | 46 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C++ F ++ L H++ H Zpz_sc00399.1.g00170.1.am.mk 24 FVCTYCDRKFCSSQALGGHQNAH 46 89******************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 6.24E-8 | 19 | 67 | No hit | No description |
PROSITE profile | PS50157 | 11.032 | 24 | 51 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 26 | 46 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 131 aa Download sequence Send to blast |
MEEEELNLEL TLLHRSPAEP FGFFVCTYCD RKFCSSQALG GHQNAHKYER SLAKRRREIA 60 AAMRAHAPAS ATGNLDAGVV VAAAGNQRVR SDAKQHAAVA PLPALLMTSN KEMPSESSID 120 CGDGLDLSLR L |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc00399.1.g00170.1.am.mk |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU963282 | 1e-40 | EU963282.1 Zea mays clone 260368 hypothetical protein mRNA, complete cds. | |||
GenBank | EU972402 | 1e-40 | EU972402.1 Zea mays clone 380740 zinc finger protein 3 mRNA, complete cds. | |||
GenBank | EU973130 | 1e-40 | EU973130.1 Zea mays clone 393764 zinc finger protein 3 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004980326.1 | 2e-37 | zinc finger protein 2 | ||||
TrEMBL | A0A0A9HWN6 | 8e-46 | A0A0A9HWN6_ARUDO; Uncharacterized protein | ||||
STRING | Si028062m | 8e-37 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP183 | 36 | 274 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G80730.1 | 4e-11 | zinc-finger protein 1 |