PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00389.1.g00070.1.sm.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C2H2
Protein Properties Length: 384aa    MW: 42445.1 Da    PI: 10.174
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00389.1.g00070.1.sm.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.23.4e-067092123
                                  EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                                  ++C++Cgk F r  nL+ H r H
  Zpz_sc00389.1.g00070.1.sm.mk 70 FVCEICGKGFQRDQNLQLHRRGH 92
                                  89*******************88 PP
2zf-C2H213.80.00018146168123
                                   EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                   +kC +C+k++  +s+ k H +t+
  Zpz_sc00389.1.g00070.1.sm.mk 146 WKCDKCNKRYAVQSDWKAHSKTC 168
                                   58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.43E-76992No hitNo description
SMARTSM003550.0127092IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.6147092IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.0E-57092IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS0002807292IPR007087Zinc finger, C2H2
SMARTSM00355260111141IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.607.5E-5134167IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.43E-7141166No hitNo description
SMARTSM00355110146166IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MLLSNNPALA PVTNQQQQQQ PPPSQQAPPA KRKRNLPGTP GKLPRQHSLI NPNAEVIALS  60
PRTLLATNRF VCEICGKGFQ RDQNLQLHRR GHNLPWKLRQ RTGKEPRKRV YVCPEKSCVH  120
HNPSRALGDL TGIKKHFCRK HGEKKWKCDK CNKRYAVQSD WKAHSKTCGT REYRCDCGTL  180
FSRRDSFITH RAFCDALTEE TLRLNNQQSH QYLLAAASTP PVPSSTGHIA THVIAPPPQL  240
PALPWQSFDN TSAQFHHQLG WLHGSKLSIS KEVPSLFSSQ QHANPVVPPA DMSATALLQK  300
AAQIGAVTSS VVGACFESSG ASSHHHQQNA SLGNVPFDDV LSAVRHAGLN QQDAVGREET  360
RDFLGVGVLQ QNLCSSSLPL HGWI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C3e-35142206367Zinc finger protein JACKDAW
5b3h_F3e-35142206367Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA sequence 5'-CTTTTGTCC-3' (PubMed:21265895, PubMed:25929516). Regulates photoperiodic flowering by modulating sugar transport and metabolism (PubMed:21265895, PubMed:25929516). Regulates SUS1 and SUS4 (PubMed:21265895). Transcription factor that regulates tissue boundaries and asymmetric cell division (PubMed:25829440). Contributes to the sequestration of 'SHORT-ROOT' to the nucleus (PubMed:25829440). {ECO:0000269|PubMed:21265895, ECO:0000269|PubMed:25829440, ECO:0000269|PubMed:25929516}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00389.1.g00070.1.sm.mk
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by 'SHORT-ROOT' (SHR)(PubMed:16640459). Strongly down-regulated by sugar deprivation, but not regulated by day-length. {ECO:0000269|PubMed:16640459}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1074681e-171AK107468.1 Oryza sativa Japonica Group cDNA clone:002-129-B01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025818706.11e-161zinc finger protein MAGPIE-like
RefseqXP_025818707.11e-161zinc finger protein MAGPIE-like
SwissprotQ9FFH31e-110IDD8_ARATH; Zinc finger protein NUTCRACKER
TrEMBLA0A2S3HZD51e-159A0A2S3HZD5_9POAL; Uncharacterized protein
STRINGOS01T0242200-011e-153(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20238320
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03840.11e-109C2H2 family protein
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]
  2. Long Y, et al.
    In vivo FRET-FLIM reveals cell-type-specific protein interactions in Arabidopsis roots.
    Nature, 2017. 548(7665): p. 97-102
    [PMID:28746306]