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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc00389.1.g00020.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | WRKY | ||||||||
Protein Properties | Length: 614aa MW: 65608.3 Da PI: 9.0706 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 97 | 1.2e-30 | 365 | 423 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed +++++tYeg+Hnh+ Zpz_sc00389.1.g00020.1.am.mk 365 ADGCQWRKYGQKMAKGNPCPRAYYRCTMAnGCPVRKQVQRCAEDRSILITTYEGTHNHP 423 7***************************999***************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 7.9E-34 | 349 | 425 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 6.93E-28 | 357 | 425 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.551 | 359 | 425 | IPR003657 | WRKY domain |
SMART | SM00774 | 8.3E-37 | 364 | 424 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.8E-27 | 366 | 423 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0016036 | Biological Process | cellular response to phosphate starvation | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0080169 | Biological Process | cellular response to boron-containing substance deprivation | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 614 aa Download sequence Send to blast |
MGIRKWGGRK KALADQVKGV DVVVVSLSLS LSLSLSPRAR KWGSFVEDGT PRLRTWENSS 60 SFPGLSRKKK YAHGVDRSMA WKLHPIQSII RQVVVFVYPD HCMDKGPGGG GGLLALDASP 120 RALGFRNPLG PPFHSTMDAD DAAVPHQHQH GRRTSVEVDF FSDDKKKTGE PERTTKKEAA 180 DTCLQLLPAG NNNNEDDGST ELAAMRSELG RMNDENQRLR GMVTQVTTSY QALQMHLVTL 240 TQQRAGQTQP PPATTTQQLQ HHQQQDGIMP RPFLDLVPRS SGGDGAEELS NSSTEAGSPR 300 RSSSTGNNKL GERGESPSKV GWLPEGRQQQ DKVHHEQEQQ QQAQEATMRK ARVSVRARSE 360 APIIADGCQW RKYGQKMAKG NPCPRAYYRC TMANGCPVRK QVQRCAEDRS ILITTYEGTH 420 NHPLPPAAMA MASTTTAAAS MLLSGSMPSA DGGVASNFLA RTVLPCSSSM ATISASAPFP 480 TVTLDLTNGP PNATTACPPQ FQMPLPGGGA APAFTVPPHV LYNQSRFSGL QMSSPSSGAH 540 VDPASRDDPS SLADTVSAAA AAITADPNFT VALAAAITSI IGGGAAAGNN NYNNNATTTR 600 SNNTTSNNTN SETH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 1e-21 | 355 | 425 | 8 | 77 | Probable WRKY transcription factor 4 |
2ayd_A | 1e-21 | 351 | 427 | 1 | 76 | WRKY transcription factor 1 |
2lex_A | 1e-21 | 355 | 425 | 8 | 77 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the control of processes related to senescence and pathogen defense (PubMed:12000796). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (PubMed:12000796). Activates the transcription of the SIRK gene and represses its own expression and that of the WRKY42 genes (PubMed:12000796). Modulates phosphate homeostasis and Pi translocation by regulating PHO1 expression (PubMed:25733771). {ECO:0000269|PubMed:12000796, ECO:0000269|PubMed:25733771}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00209 | DAP | Transfer from AT1G62300 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc00389.1.g00020.1.am.mk |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid, ethylene, jasmonic acid, pathogens, wounding and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015622142.1 | 0.0 | probable WRKY transcription factor 31 isoform X2 | ||||
Swissprot | Q9C519 | 1e-114 | WRKY6_ARATH; WRKY transcription factor 6 | ||||
TrEMBL | A0A0E0BZX3 | 0.0 | A0A0E0BZX3_9ORYZ; Uncharacterized protein | ||||
STRING | OMERI01G09220.1 | 0.0 | (Oryza meridionalis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5265 | 36 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G62300.1 | 1e-89 | WRKY family protein |