PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc00383.1.g00040.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 138aa MW: 15356.9 Da PI: 11.6211 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 80.7 | 1e-25 | 86 | 136 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+ien + rqvtfskRr+g++ KA+EL vLCda+v v++fsstg+ly+yss Zpz_sc00383.1.g00040.1.am.mk 86 KKIENITSRQVTFSKRRTGLFNKAKELAVLCDAQVGVLVFSSTGRLYDYSS 136 68***********************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 28.245 | 78 | 138 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 4.8E-35 | 78 | 137 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 3.27E-24 | 78 | 137 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.4E-25 | 80 | 100 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 5.51E-33 | 80 | 137 | No hit | No description |
Pfam | PF00319 | 2.4E-24 | 87 | 134 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.4E-25 | 100 | 115 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.4E-25 | 115 | 136 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 138 aa Download sequence Send to blast |
MTIKKTGTCQ LDFVPIGPTH ANADAMHAKV WLRAEQNKSR LDSLLAARLA RRLARSADQP 60 PASRFVRKQI KSFATGAMVR GKTVMKKIEN ITSRQVTFSK RRTGLFNKAK ELAVLCDAQV 120 GVLVFSSTGR LYDYSSTR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc00383.1.g00040.1.am.mk |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP129 | 38 | 398 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51870.2 | 9e-28 | AGAMOUS-like 71 |