PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc00382.1.g00210.1.sm.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | WRKY | ||||||||
Protein Properties | Length: 392aa MW: 42008.5 Da PI: 10.465 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 99.1 | 2.8e-31 | 326 | 384 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D+++WrKYGqK++kgs++pr+YY+C+s gCp++k+ver+ +dp+++++tYeg+Hnh+ Zpz_sc00382.1.g00210.1.sm.mk 326 ADEFSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERCVDDPSMLIVTYEGDHNHN 384 69*************************988****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF10533 | 3.3E-13 | 281 | 323 | IPR018872 | Zn-cluster domain |
Gene3D | G3DSA:2.20.25.80 | 8.7E-34 | 313 | 384 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.987 | 320 | 386 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 8.24E-27 | 323 | 384 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.5E-38 | 325 | 385 | IPR003657 | WRKY domain |
Pfam | PF03106 | 8.7E-27 | 327 | 383 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 392 aa Download sequence Send to blast |
MEPSSVEGME EANRAAVQSC HRVLALLSNP HGHLVSNKDL AAATGEAVSK FGSLTSKLAS 60 GDGHQGHAKV RNVKRPLPII DSNLFLESPA VAAAAAARTP RPGPSTSLQL FSRYQQQQGE 120 GSGSSSKEPV RIPAHFPKRL LLDNPAVDAL PIKLVQPVSV APPAGPPHPA LPAAHLQFIQ 180 QHQSYQRYQF MQQMQIQSEM MKRSSLGDQG HQGGSGGAAG GKGVNLKFDG SNCTASSSRS 240 FLSSLSLEGS LASLDGSRAS RPFQLVSGSQ TSSNPEPGVQ RRKCTGREDG SGRCATRCHC 300 AKKRKLRIRR SIKVPAISNK VADIPADEFS WRKYGQKPIK GSPHPRGYYK CSSVRGCPAR 360 KHVERCVDDP SMLIVTYEGD HNHNRALAQP AA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 3e-19 | 322 | 384 | 14 | 75 | Probable WRKY transcription factor 4 |
2lex_A | 3e-19 | 322 | 384 | 14 | 75 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc00382.1.g00210.1.sm.mk |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015632919.1 | 0.0 | protein WRKY1 | ||||
Swissprot | Q32SG4 | 0.0 | WRKY1_MAIZE; Protein WRKY1 | ||||
TrEMBL | A0A0E0D6P5 | 0.0 | A0A0E0D6P5_9ORYZ; Uncharacterized protein | ||||
STRING | OMERI03G30220.1 | 0.0 | (Oryza meridionalis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP10250 | 32 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04670.1 | 2e-49 | WRKY DNA-binding protein 39 |