PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00380.1.g00170.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C2H2
Protein Properties Length: 251aa    MW: 26594.4 Da    PI: 8.3535
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00380.1.g00170.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.72e-05115137123
                                   EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                   y+C++C + F++   L  H+++H
  Zpz_sc00380.1.g00170.1.am.mk 115 YTCGYCRREFPSAQALGGHMNVH 137
                                   9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.12E-5113142No hitNo description
PfamPF139124.4E-6115138IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.824115142IPR007087Zinc finger, C2H2
PROSITE patternPS000280117137IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MPLRSSIYYR LLWQAQGCLV AQKRPCPPCT NMSLSLPRNE ERCSDGISAV ASMACHLCPD  60
SGVGRMADAA QGLHLERDHG RGLKQQPATA AWTPSNICLN PCFSWPVPPP SSSSYTCGYC  120
RREFPSAQAL GGHMNVHRRD RARLRQCCSA FAPSPNLIAA HHHRWAAAAP RPPLPNLNLL  180
PPHCTNAATA EPVVYSFFSA TVSAAAAPAA RKAAVGVSLD LGIAGGVCNR GGGAAEEGGL  240
DLELRLGCSC E
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00380.1.g00170.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9591931e-44EU959193.1 Zea mays clone 211832 hypothetical protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004975075.21e-44transcriptional regulator SUPERMAN
TrEMBLA0A1E5W4I14e-54A0A1E5W4I1_9POAL; Uncharacterized protein
STRINGPavir.J31403.1.p3e-51(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP46673065
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37740.12e-14zinc-finger protein 10