PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00379.1.g00160.1.sm.mkhc
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family WRKY
Protein Properties Length: 369aa    MW: 40499.6 Da    PI: 8.0818
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00379.1.g00160.1.sm.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY68.41.1e-21110171259
                                     --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSS.TTEEEEEEES--SS- CS
                            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaed.pkvveitYegeHnhe 59 
                                     +Dgy WrKYGqK +++++fprsY+rC+++   gCp+ k+v+r ++d p   +++Y  eH+++
  Zpz_sc00379.1.g00160.1.sm.mkhc 110 SDGYLWRKYGQKRITNKDFPRSYFRCSHHrkrGCPAMKQVQRHSHDePPQYVVVYVHEHTCD 171
                                     6***************************99999*********87652678999******996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.6E-23100172IPR003657WRKY domain
SuperFamilySSF1182904.97E-21104171IPR003657WRKY domain
PROSITE profilePS5081118.762104173IPR003657WRKY domain
SMARTSM007743.5E-28109172IPR003657WRKY domain
PfamPF031067.1E-23111171IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MQAHSRFAAS SSVSADEHEA LIRELTRGHE LTARLWAEAP RALRGQGQAE DAAAFILQEV  60
SRAFTVCISI MRSPPPSRAP PPPPPTEAAT RRFRDENAPR REVVTYAPDS DGYLWRKYGQ  120
KRITNKDFPR SYFRCSHHRK RGCPAMKQVQ RHSHDEPPQY VVVYVHEHTC DTTVWEPEVT  180
PSPAPAGATT SPLPLPADYL PGLASQQRGV AQAEQERQAM VSTLAVVLGA HSPAGSGSRV  240
AAFEREPQQQ QHGASASVVD PSVVGGGDEL PRLDVDAELD VMDYDVTGAM YLGDSYGLPD  300
DDGLDLLSIR VRAVARAAAC WCWKATVTSG TPASRPRRRV DVTRVRVRRR CPYPARSFLL  360
LGSMAMSAD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A5e-151111701068OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00379.1.g00160.1.sm.mkhc
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0638615e-61BT063861.1 Zea mays full-length cDNA clone ZM_BFc0113G18 mRNA, complete cds.
GenBankEU9564875e-61EU956487.1 Zea mays clone 1564344 WRKY DNA binding domain containing protein mRNA, complete cds.
GenBankJX4699485e-61JX469948.1 Zea mays subsp. mays clone UT3209 WRKY-type transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004970387.12e-81probable WRKY transcription factor 4
TrEMBLK3XJP85e-80K3XJP8_SETIT; Uncharacterized protein
STRINGSi002121m9e-81(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125382837
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.12e-18WRKY DNA-binding protein 70