PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc00367.1.g00130.1.sm.mkhc | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | NAC | ||||||||
Protein Properties | Length: 258aa MW: 28125.4 Da PI: 8.5865 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 145.4 | 3.2e-45 | 11 | 142 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdL.pkkvkaeekewyfFskrdkkyatgkrknrat 78 lppGfrF+Ptdeel+v+yL++++ +++l+++ i++++i+ ++P+dL p +e e yfF++++ ky +g+r+nrat Zpz_sc00367.1.g00130.1.sm.mkhc 11 LPPGFRFRPTDEELIVHYLRRRAFASPLPAAVDIPDIRILAHDPSDLlP--PGWNEPERYFFTCKEAKYVKGRRANRAT 87 79***************************9666**************43..3446789********************* PP NAM 79 ksgyWkatgkdkevlsk.....kgelvglkktLvfykgrapkgektdWvmheyrl 128 +gyWkatgk+k+v ++ + lvg+k++Lvfy+gr p+g+ktdWvmheyrl Zpz_sc00367.1.g00130.1.sm.mkhc 88 GAGYWKATGKEKPVAVAapggnQAVLVGMKRSLVFYRGRPPSGSKTDWVMHEYRL 142 **************999897655666***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.97E-50 | 8 | 173 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 49.7 | 11 | 173 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.0E-26 | 12 | 142 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 258 aa Download sequence Send to blast |
MDAKEVVRRR LPPGFRFRPT DEELIVHYLR RRAFASPLPA AVDIPDIRIL AHDPSDLLPP 60 GWNEPERYFF TCKEAKYVKG RRANRATGAG YWKATGKEKP VAVAAPGGNQ AVLVGMKRSL 120 VFYRGRPPSG SKTDWVMHEY RLAGAGLAPC RRAQAGEASR ADEGWVLCRV FRKRGSSASD 180 GTAPAEADAD ADADERGAEE EGEGDDAAPA SGFIDFFARA DRQRRRRASS PVVTVSSSCL 240 TDASHECRDQ DTTSGGCA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-37 | 6 | 177 | 12 | 169 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-37 | 6 | 177 | 12 | 169 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-37 | 6 | 177 | 12 | 169 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-37 | 6 | 177 | 12 | 169 | NO APICAL MERISTEM PROTEIN |
4dul_A | 2e-37 | 6 | 177 | 12 | 169 | NAC domain-containing protein 19 |
4dul_B | 2e-37 | 6 | 177 | 12 | 169 | NAC domain-containing protein 19 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 220 | 226 | DRQRRRR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078, ECO:0000269|PubMed:24442717}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc00367.1.g00130.1.sm.mkhc |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269|PubMed:21673078}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP091915 | 1e-107 | FP091915.1 Phyllostachys edulis cDNA clone: bphyem115l12, full insert sequence. | |||
GenBank | FP099185 | 1e-107 | FP099185.1 Phyllostachys edulis cDNA clone: bphyem106m22, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025809222.1 | 1e-113 | NAC domain-containing protein 83 | ||||
Swissprot | Q9FY93 | 1e-53 | NAC83_ARATH; NAC domain-containing protein 83 | ||||
TrEMBL | A0A3L6RAA2 | 1e-118 | A0A3L6RAA2_PANMI; NAC domain-containing protein 83 | ||||
STRING | OPUNC12G10470.1 | 1e-109 | (Oryza punctata) | ||||
STRING | Sb08g014060.1 | 1e-109 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6317 | 32 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G13180.1 | 4e-47 | NAC domain containing protein 83 |
Publications ? help Back to Top | |||
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