PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc00363.1.g00030.1.am.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

NF-YB

Protein Properties

Length: 379aa MW: 41720.4 Da PI: 10.0051

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc00363.1.g00030.1.am.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	111.7	4.2e-35	33	122	6	95
NF-YB 6 rflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvy 86 ++lP+anv+r+m++v+P++ kis ak ++++c++ef++fv++ea++ + +e+r+ti+++d+ a+ lGf+dyv+pl++y Zpz_sc00363.1.g00030.1.am.mk 33 NELPMANVVRLMRQVIPTDVKISGRAKRLTHDCAVEFVAFVGGEAAECAAAEHRRTIAPEDFTRAFERLGFDDYVAPLSTY 113 579**************************************************************************** PP NF-YB 87 lkkyreleg 95 +++yre ++ Zpz_sc00363.1.g00030.1.am.mk 114 IRRYRENHQ 122 ***9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00808	3.5E-14	34	95	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
Gene3D	G3DSA:1.10.20.10	1.0E-26	34	123	IPR009072	Histone-fold
SuperFamily	SSF47113	1.32E-24	35	134	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 379 aa Download sequence Send to blast
MERKAKRRAN GSVRDGKRPA PAAGSDDGDG AGNELPMANV VRLMRQVIPT DVKISGRAKR 60 LTHDCAVEFV AFVGGEAAEC AAAEHRRTIA PEDFTRAFER LGFDDYVAPL STYIRRYREN 120 HQNGGIAPPR PSPAASSFTD EEVQFLMSVV PEPLGGYDGA ASSSKEAPPP DNYTMTKRMP 180 ISTHLQPEPP RHQGCLCCRI SAAIDDAPDP AAAAHHPHPP PPPPPHHHHH HKRAIDRLSK 240 HASHRQLALR IRSCRCKSSL PFACFARRFF CQIRGTANAH GHHCSRLRAP GALVPRTARA 300 PITYFSCQQK GSFATKCQCT KGNGTVSDSS LTRRARRHRH LPRLALVCYC AIYAHARQAG 360 EEIELARRPP LTQIRTSDL

Sequence ? help Back to Top

Protein Sequence Length: 379 aa Download sequence Send to blast

MERKAKRRAN GSVRDGKRPA PAAGSDDGDG AGNELPMANV VRLMRQVIPT DVKISGRAKR  60
LTHDCAVEFV AFVGGEAAEC AAAEHRRTIA PEDFTRAFER LGFDDYVAPL STYIRRYREN  120
HQNGGIAPPR PSPAASSFTD EEVQFLMSVV PEPLGGYDGA ASSSKEAPPP DNYTMTKRMP  180
ISTHLQPEPP RHQGCLCCRI SAAIDDAPDP AAAAHHPHPP PPPPPHHHHH HKRAIDRLSK  240
HASHRQLALR IRSCRCKSSL PFACFARRFF CQIRGTANAH GHHCSRLRAP GALVPRTARA  300
PITYFSCQQK GSFATKCQCT KGNGTVSDSS LTRRARRHRH LPRLALVCYC AIYAHARQAG  360
EEIELARRPP LTQIRTSDL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_A	7e-22	35	119	13	97	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc00363.1.g00030.1.am.mk

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP13659	26	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G47670.2	6e-21	nuclear factor Y, subunit B6