PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc00363.1.g00020.1.am.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

NF-YB

Protein Properties

Length: 386aa MW: 41902.9 Da PI: 7.0678

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc00363.1.g00020.1.am.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	75	1.1e-23	251	341	5	95
NF-YB 5 drflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkv 85 d+ l + ++r+++ vl a+ k+s ak++vq c+ efi v +ea+++c++++r+ ++++d+ +l +lG++ y+e + + Zpz_sc00363.1.g00020.1.am.mk 251 DNQLSRSGIARMIRAVLDAQVKVSGPAKNLVQTCAKEFIVAVVDEATKQCHQNDRQMLTPEDVALSLRSLGLNSYIELMGT 331 67788889*********************************************************************** PP NF-YB 86 ylkkyreleg 95 yl++yre+ + Zpz_sc00363.1.g00020.1.am.mk 332 YLRRYRETPR 341 ****9865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	5.6E-7	73	177	IPR009072	Histone-fold
SuperFamily	SSF47113	7.55E-7	73	175	IPR009072	Histone-fold
Gene3D	G3DSA:1.10.20.10	1.7E-23	244	367	IPR009072	Histone-fold
SuperFamily	SSF47113	3.59E-19	251	350	IPR009072	Histone-fold
Pfam	PF00808	2.6E-9	257	316	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 386 aa Download sequence Send to blast
MADVEHQGTY DIAPHCARNS NVVDASLVDD GEDGHCSAHL SVGESSPDLV LPLDALASTL 60 LVPESKGQVD VPTCAWETID QCITEAAARL AFESANAAAR GNRKVITPED VNRAIESLHQ 120 KDPDLGMVLK DMNVIVTRCN RATAVRRRRE RRLRKERAAA EKKAKKQEDL EASAAKEGLS 180 GAPRHGRGQR TDRRSCTLPW RHGITRAQGR LSGKLPLCHA RKPGHGADDN RMACRSGASS 240 KRGGEEEEPS DNQLSRSGIA RMIRAVLDAQ VKVSGPAKNL VQTCAKEFIV AVVDEATKQC 300 HQNDRQMLTP EDVALSLRSL GLNSYIELMG TYLRRYRETP RPRDGARESD STSAPAPAAG 360 DHSDEELLQI LDQAMDEAIG NGNGSS

Sequence ? help Back to Top

Protein Sequence Length: 386 aa Download sequence Send to blast

MADVEHQGTY DIAPHCARNS NVVDASLVDD GEDGHCSAHL SVGESSPDLV LPLDALASTL  60
LVPESKGQVD VPTCAWETID QCITEAAARL AFESANAAAR GNRKVITPED VNRAIESLHQ  120
KDPDLGMVLK DMNVIVTRCN RATAVRRRRE RRLRKERAAA EKKAKKQEDL EASAAKEGLS  180
GAPRHGRGQR TDRRSCTLPW RHGITRAQGR LSGKLPLCHA RKPGHGADDN RMACRSGASS  240
KRGGEEEEPS DNQLSRSGIA RMIRAVLDAQ VKVSGPAKNL VQTCAKEFIV AVVDEATKQC  300
HQNDRQMLTP EDVALSLRSL GLNSYIELMG TYLRRYRETP RPRDGARESD STSAPAPAAG  360
DHSDEELLQI LDQAMDEAIG NGNGSS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_B	5e-14	251	338	7	94	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A	5e-14	251	338	7	94	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc00363.1.g00020.1.am.mk

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP33077	3	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09030.1	3e-18	nuclear factor Y, subunit B4