PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00344.1.g00090.1.sm.mkhc
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family WRKY
Protein Properties Length: 216aa    MW: 23735.4 Da    PI: 8.9784
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00344.1.g00090.1.sm.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY68.41.1e-213091259
                                    --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-.SSSTTEEEEEEES--SS- CS
                            WRKY  2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkvers.aedpkvveitYegeHnhe 59
                                    +Dg++WrKYG K++++++fpr YYrCt++   +Cp++k+v+++ ++dp +  +tY +eH+++
  Zpz_sc00344.1.g00090.1.sm.mkhc 30 NDGHQWRKYGEKKINNTNFPRYYYRCTYKdnmNCPATKQVQQKdHSDPPLYAVTYYNEHTCN 91
                                    8***************************99999*******8752679*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.6E-241691IPR003657WRKY domain
SuperFamilySSF1182906.67E-232391IPR003657WRKY domain
PROSITE profilePS5081116.4212493IPR003657WRKY domain
SMARTSM007742.3E-322992IPR003657WRKY domain
PfamPF031061.9E-253090IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MSPAPSSLQS HMNSRKEKRM RKVDTFAPHN DGHQWRKYGE KKINNTNFPR YYYRCTYKDN  60
MNCPATKQVQ QKDHSDPPLY AVTYYNEHTC NSAFLPLSPS EFQLQTASGK AVSICFDSSA  120
PRDQPAGNAS AGSPSSSAAA TAGRRPTPPE STKRPSTVPV LQRSETYPWG AGAVEQKPSG  180
APCSTECHDA FPAGAAVPEE VVDAGRFGSI RFFHFL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A8e-153090968OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00344.1.g00090.1.sm.mkhc
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKU0586231e-156KU058623.1 UNVERIFIED: Panicum miliaceum WRKY6-like gene, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025792602.11e-118probable WRKY transcription factor 35
TrEMBLA0A2S3IR471e-116A0A2S3IR47_9POAL; Uncharacterized protein
STRINGPavir.Ib01500.1.p1e-117(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP203235100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46400.12e-19WRKY DNA-binding protein 46