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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc00331.1.g00110.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | GRAS | ||||||||
Protein Properties | Length: 223aa MW: 23736.3 Da PI: 11.4058 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 52.2 | 1.2e-16 | 85 | 172 | 87 | 173 |
GRAS 87 vsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg....skeeleetge 163 +sP+++++ +aN aI+eav+ ++++H +Dfd+s + Q +aL + La p+ sl++T++ +p+s ++ +l +++e Zpz_sc00331.1.g00110.1.am.mk 85 ASPCFRLALHAANVAIVEAVSDHRAIHLVDFDVSAP-QHAALVHYLAGVPG--TSLKVTAITDPTSPfaqsQTATLPAVEE 162 79*******************************987.99********9655..59********998889999999****** PP GRAS 164 rLakfAeelg 173 rL+k+A+++g Zpz_sc00331.1.g00110.1.am.mk 163 RLKKLADRVG 172 ******9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 10.781 | 1 | 223 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 4.1E-14 | 85 | 172 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 223 aa Download sequence Send to blast |
MPKLKVYLLA AAQLSHRRPA LSPPPRLSPM HSCASPRRQL LIPTPALQSS SLQRRRRPGP 60 IGAATHGAGL RVESSAGLAA LTAPASPCFR LALHAANVAI VEAVSDHRAI HLVDFDVSAP 120 QHAALVHYLA GVPGTSLKVT AITDPTSPFA QSQTATLPAV EERLKKLADR VGNAGLDDGG 180 SQGRGRRELL QHPCSAQSQK GTRRQRQVVD VPFFFFLIAG KID |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc00331.1.g00110.1.am.mk |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | B4FTE3 | 7e-35 | B4FTE3_MAIZE; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP24922 | 3 | 6 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G21450.1 | 3e-11 | SCARECROW-like 1 |