PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00309.1.g00450.1.sm.mkhc
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family HSF
Protein Properties Length: 526aa    MW: 56991.9 Da    PI: 4.4774
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00309.1.g00450.1.sm.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind114.28.7e-36481392102
                                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEE CS
                    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiwe 80 
                                     Fl+k+ye+++d+++++++sw   +nsfvv+++ efa+++LpkyFkhsnf+SFvRQLn+YgF+kv+ ++         we
  Zpz_sc00309.1.g00450.1.sm.mkhc  48 FLMKTYEMVDDPATDDIVSWGPGNNSFVVWNTPEFARDLLPKYFKHSNFSSFVRQLNTYGFRKVDPDR---------WE 117
                                     9*********************99*****************************************999.........** PP

                                     EEESXXXXXXXXXXXXXXXXXX CS
                    HSF_DNA-bind  81 FkhksFkkgkkellekikrkks 102
                                     F+++ F +g+k+ll++i+r+k 
  Zpz_sc00309.1.g00450.1.sm.mkhc 118 FANEGFLRGQKHLLKTINRRKP 139
                                     *******************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.3E-6244137IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467854.22E-3644137IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.104.1E-3945137IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.9E-194871IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.8E-3148137IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.9E-198698IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434087111IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.9E-1999111IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 526 aa     Download sequence    Send to blast
MESGVAAAAA AAAAATTVTT AVAPPVDPAP AAAHTAVTNG GGAPPPPFLM KTYEMVDDPA  60
TDDIVSWGPG NNSFVVWNTP EFARDLLPKY FKHSNFSSFV RQLNTYGFRK VDPDRWEFAN  120
EGFLRGQKHL LKTINRRKPS LQGNNQQQQP QLQNAPIPAC VEVGKFGLEE EIECLKRDKN  180
VLMQELVRLR QQQQTTDHQL QTLGKRLQGM ESRQQQMMSF LAKAMQSPGF LAQFVQQNEN  240
SRRRIVAVNK KRRLPKQDGG LDSESASLDG QIVKYQPMIN EAAKAMLSKI LNLDASHRFE  300
TMGNSDNFLL ENYMPASQGF DSSSATRNSG VTLAEVPANS GLPYLATSSG LSAICSSSTT  360
PEIQCPVALD NNSSSQVPSM SAAPPVPPVP KPMTPGQSDI SIPEFSDLQD IVTDSIPGGT  420
FGMPGPEGVF PLPEEGDDSI PIETDDILCD DETEKLPGII DSFWEQFLVA SPISGDNGEV  480
DSGVLETPQE NGWNKVENLA NITEQMGLLS SNHNGLLGFR SSLVTD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A1e-254614118124Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00309.1.g00450.1.sm.mkhc
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not induced by heat stress. {ECO:0000269|PubMed:18064488}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0401310.0BT040131.1 Zea mays full-length cDNA clone ZM_BFc0066O22 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015630421.10.0heat stress transcription factor A-1
SwissprotQ84T610.0HSFA1_ORYSJ; Heat stress transcription factor A-1
TrEMBLA0A0E0D9P90.0A0A0E0D9P9_9ORYZ; Uncharacterized protein
STRINGONIVA03G43540.10.0(Oryza nivara)
STRINGORGLA03G0383200.10.0(Oryza glaberrima)
STRINGOBART03G41440.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP50973151
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16820.21e-115heat shock factor 3
Publications ? help Back to Top
  1. Chauhan H,Khurana N,Agarwal P,Khurana P
    Heat shock factors in rice (Oryza sativa L.): genome-wide expression analysis during reproductive development and abiotic stress.
    Mol. Genet. Genomics, 2011. 286(2): p. 171-87
    [PMID:21792744]