PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00304.1.g00390.1.sm.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C2H2
Protein Properties Length: 525aa    MW: 55457.9 Da    PI: 6.0347
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00304.1.g00390.1.sm.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.90.00076178219
                                  EETTTTEEESSHHHHHHH CS
                       zf-C2H2  2 kCpdCgksFsrksnLkrH 19
                                  +C++Cgk F++++ +  H
  Zpz_sc00304.1.g00390.1.sm.mk 61 VCKNCGKEFTSWERFLDH 78
                                  7***********999988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003552106080IPR015880Zinc finger, C2H2-like
SuperFamilySSF576677.53E-7227250No hitNo description
PROSITE profilePS5015710.221228255IPR007087Zinc finger, C2H2
PfamPF139121.4E-8228252IPR007087Zinc finger, C2H2
SMARTSM003550.25228250IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280230250IPR007087Zinc finger, C2H2
SuperFamilySSF576677.53E-7341368No hitNo description
PROSITE profilePS501579.182346368IPR007087Zinc finger, C2H2
PfamPF139124.4E-11346369IPR007087Zinc finger, C2H2
SMARTSM003553.7346368IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280348368IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 525 aa     Download sequence    Send to blast
MRAHSSSDDV FAGAGADDGD EPARGRGPSD DQWDAAGTSS STTPAYALRA NPNRQVRSCQ  60
VCKNCGKEFT SWERFLDHGR CNSDDEGRAE GSGSPRHSLS PSEADDGEED PAVSATEWSK  120
GKRSRRVKSV AALDDAPATS SRRFMSGEEE DLANCLVMLS SSNTEQAATV TRTNTQQKQS  180
ASVSRERDRG PQLLHQISFL AQAPDPVMAL PSATTTIQYV SPAPRGMFEC KACKKEFTSH  240
QALGGHRASH KKVKGCFAAR LESNVSKTPS HAAPVDRNED NGKAVVVEGS THATTDTKPS  300
CNAGTDGDTN VGTTSETAAA LSMALAPAAA FNVAEAPSGK KNAKMHECSV CHRLFTSGQA  360
LGGHKRCHWL TSSTADPTIP VANLSVPPIT EDLVGAVRHQ LMLRPMVDAS EPALDLTISA  420
KLSTLTPAPG SSTFHLDASA QALHLQSSVE PGNASHRNTC GHDDNDVAAT ASNAAQDESE  480
SISIKRARLT DLKDVVRMDE EASEPWLQVG IGSSSAGGDE KNSRE
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00304.1.g00390.1.sm.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025825379.10.0zinc finger protein ZAT4-like
TrEMBLA0A1E5WGG60.0A0A1E5WGG6_9POAL; Uncharacterized protein
STRINGPavir.Gb01112.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35243262
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17180.13e-17C2H2-like zinc finger protein