PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00301.1.g00200.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family B3
Protein Properties Length: 648aa    MW: 72356.9 Da    PI: 10.9157
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00301.1.g00200.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B340.84e-1384171197
                                   EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EE CS
                            B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfv 80 
                                   ffkv+     ++++ + +p +fa+++ +   ++s  + led+ g +W+v+l  r ++    l+ GW++Fv ++ +  g+f+
  Zpz_sc00301.1.g00200.1.am.mk  84 FFKVM--VGRFSES-MDIPPPFAKTIlD--MAGS-NIYLEDSFGLRWRVRL--RLRGAVLSLGHGWNNFVLDHAVSCGEFL 156
                                   66666..4555555.99******99952..2343.7***************..77777799******************** PP

                                   EEEE-SSSEE..EEEEE CS
                            B3  81 vFkldgrsefelvvkvf 97 
                                   vF+ + rs f   v++f
  Zpz_sc00301.1.g00200.1.am.mk 157 VFRQIARSVF--AVQMF 171
                                   ***8887877..66665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019365.69E-1981173IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.1E-1781174IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.85881174IPR003340B3 DNA binding domain
CDDcd100174.63E-982171No hitNo description
PfamPF023622.2E-1084170IPR003340B3 DNA binding domain
SMARTSM010191.0E-1084174IPR003340B3 DNA binding domain
CDDcd100176.76E-6228277No hitNo description
SuperFamilySSF1019366.67E-7232281IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.2E-5248281IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508637.204250287IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 648 aa     Download sequence    Send to blast
MAVTALKKEQ EDGVVHIDSG EEEEAEKVVK RRRKRKKKKA IDPRCTKRPC VDCTRRCARI  60
HGRVSSSSSG NNNKARPVPA VPSFFKVMVG RFSESMDIPP PFAKTILDMA GSNIYLEDSF  120
GLRWRVRLRL RGAVLSLGHG WNNFVLDHAV SCGEFLVFRQ IARSVFAVQM FAPSAIERLY  180
LCERNRRQSR KRKPRQKASS PRIQTGKIIK SNGGSCKRKR RTDAQSDEVP DDCKMSADLC  240
IDCTPRFSGF ITGWVEISRE NSLREGDTCE FELSGKKEFS FQNTFGFALS RPLTRREGGR  300
NSVWCPSESA VELMNERLLA MAERARCLRV LSRGNSFARP GIHFSCWFQA TRSSLLLDSK  360
AIENKRTGIN KGAAPLREYS AGQRLPTSSN TGGTAGEPKK EWKKSDRGLG MHTSSQAQHH  420
YYTSVHHPLA SVLCLSNVPI SRRRRKVCIC IAARRAKRNL GVRTLPRESY RVSREDNPAY  480
HGHSGRHRHH GASGTGSAPW LRAMERVLGL ECRAPSRGFS RSMRRPAKAT RRIQGRLEPK  540
KMDEDVRTTD IPTRTDSLSC SRPIDQPGHQ YLSTDLCVVI YTSSCPTRHA LMTGRYIAVD  600
GSVVMLTLVA TTWRDGADER PSFCAATMAA AGKISGGGGG LRIMASVR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13038RRRKRKKKK
23236RKRKK
33238RKRKKKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00301.1.g00200.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP114613240