PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc00301.1.g00200.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | B3 | ||||||||
Protein Properties | Length: 648aa MW: 72356.9 Da PI: 10.9157 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 40.8 | 4e-13 | 84 | 171 | 1 | 97 |
EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfv 80 ffkv+ ++++ + +p +fa+++ + ++s + led+ g +W+v+l r ++ l+ GW++Fv ++ + g+f+ Zpz_sc00301.1.g00200.1.am.mk 84 FFKVM--VGRFSES-MDIPPPFAKTIlD--MAGS-NIYLEDSFGLRWRVRL--RLRGAVLSLGHGWNNFVLDHAVSCGEFL 156 66666..4555555.99******99952..2343.7***************..77777799******************** PP EEEE-SSSEE..EEEEE CS B3 81 vFkldgrsefelvvkvf 97 vF+ + rs f v++f Zpz_sc00301.1.g00200.1.am.mk 157 VFRQIARSVF--AVQMF 171 ***8887877..66665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 5.69E-19 | 81 | 173 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 6.1E-17 | 81 | 174 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 12.858 | 81 | 174 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 4.63E-9 | 82 | 171 | No hit | No description |
Pfam | PF02362 | 2.2E-10 | 84 | 170 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.0E-10 | 84 | 174 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 6.76E-6 | 228 | 277 | No hit | No description |
SuperFamily | SSF101936 | 6.67E-7 | 232 | 281 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 3.2E-5 | 248 | 281 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 7.204 | 250 | 287 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 648 aa Download sequence Send to blast |
MAVTALKKEQ EDGVVHIDSG EEEEAEKVVK RRRKRKKKKA IDPRCTKRPC VDCTRRCARI 60 HGRVSSSSSG NNNKARPVPA VPSFFKVMVG RFSESMDIPP PFAKTILDMA GSNIYLEDSF 120 GLRWRVRLRL RGAVLSLGHG WNNFVLDHAV SCGEFLVFRQ IARSVFAVQM FAPSAIERLY 180 LCERNRRQSR KRKPRQKASS PRIQTGKIIK SNGGSCKRKR RTDAQSDEVP DDCKMSADLC 240 IDCTPRFSGF ITGWVEISRE NSLREGDTCE FELSGKKEFS FQNTFGFALS RPLTRREGGR 300 NSVWCPSESA VELMNERLLA MAERARCLRV LSRGNSFARP GIHFSCWFQA TRSSLLLDSK 360 AIENKRTGIN KGAAPLREYS AGQRLPTSSN TGGTAGEPKK EWKKSDRGLG MHTSSQAQHH 420 YYTSVHHPLA SVLCLSNVPI SRRRRKVCIC IAARRAKRNL GVRTLPRESY RVSREDNPAY 480 HGHSGRHRHH GASGTGSAPW LRAMERVLGL ECRAPSRGFS RSMRRPAKAT RRIQGRLEPK 540 KMDEDVRTTD IPTRTDSLSC SRPIDQPGHQ YLSTDLCVVI YTSSCPTRHA LMTGRYIAVD 600 GSVVMLTLVA TTWRDGADER PSFCAATMAA AGKISGGGGG LRIMASVR |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 30 | 38 | RRRKRKKKK |
2 | 32 | 36 | RKRKK |
3 | 32 | 38 | RKRKKKK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc00301.1.g00200.1.am.mk |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11461 | 32 | 40 |