PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc00294.1.g00130.1.sm.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | ERF | ||||||||
Protein Properties | Length: 198aa MW: 20644.5 Da PI: 9.1787 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61.8 | 1.5e-19 | 21 | 71 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 ++++GVr ++ +gr++AeIrd + r +r++lg+f+tae Aa+a++aa++ ++g Zpz_sc00294.1.g00130.1.sm.mk 21 PRFRGVRKRP-WGRYAAEIRDpV-----RkARVWLGTFDTAEAAARAYDAAALHFRG 71 689*******.**********44.....55**********************99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 9.38E-20 | 21 | 81 | No hit | No description |
Pfam | PF00847 | 4.1E-13 | 21 | 71 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.0E-35 | 22 | 85 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.421 | 22 | 79 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.0E-31 | 22 | 79 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.73E-22 | 22 | 80 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 1.3E-10 | 23 | 34 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.3E-10 | 45 | 61 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 198 aa Download sequence Send to blast |
MAPKTAPPSA AAAVSDGMME PRFRGVRKRP WGRYAAEIRD PVRKARVWLG TFDTAEAAAR 60 AYDAAALHFR GTKAKTNFPV AFSQARALPQ PKALAVSPSS STVELPSQDS PAPSLDLSLG 120 MPAAVAAQPF LFLDPRLAVT VAVPAPAPLR PVAVPANKAT TCRDDEQSDT GSSSSVVDAS 180 PAVDVGFDLN MPPPAEVA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 8e-21 | 17 | 83 | 9 | 76 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc00294.1.g00130.1.sm.mk |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT018001 | 4e-75 | BT018001.1 Zea mays clone EL01N0526G07.c mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025823499.1 | 5e-81 | ethylene-responsive transcription factor 4-like | ||||
TrEMBL | A0A3L6Q0F7 | 6e-81 | A0A3L6Q0F7_PANMI; Ethylene-responsive transcription factor 4-like | ||||
STRING | Pavir.Ga00485.1.p | 5e-81 | (Panicum virgatum) | ||||
STRING | Pavir.Gb00545.1.p | 1e-81 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11853 | 25 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G53170.1 | 9e-25 | ethylene response factor 8 |