PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00289.1.g00260.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family HSF
Protein Properties Length: 587aa    MW: 63366.6 Da    PI: 11.0864
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00289.1.g00260.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind101.48.3e-323644562103
                                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEE CS
                  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFk 82 
                                   F+ k+y++++d++++ ++ w   +n+f+vld+  f++ +Lp+yFkh+nfaSFvRQLn+YgF+kv+ ++         weF+
  Zpz_sc00289.1.g00260.1.am.mk 364 FVAKTYHMVSDPATDAVVCWGVASNTFLVLDPAAFSDYLLPSYFKHRNFASFVRQLNTYGFRKVDADR---------WEFA 435
                                   9********************999*****************************************999.........**** PP

                                   ESXXXXXXXXXXXXXXXXXXX CS
                  HSF_DNA-bind  83 hksFkkgkkellekikrkkse 103
                                   h+sF +g+++ll  i rk+++
  Zpz_sc00289.1.g00260.1.am.mk 436 HESFLRGQTQLLPLIVRKRKK 456
                                   ****************99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.4E-34355447IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004155.8E-48360453IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.09E-29361453IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000562.0E-16364387IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.2E-27364453IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.0E-16402414IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340403427IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.0E-16415427IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006970Biological Processresponse to osmotic stress
GO:0009737Biological Processresponse to abscisic acid
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 587 aa     Download sequence    Send to blast
MKGKRGAAGK LRCTLGGARF CSTTGAASRR SLGPGSIRHE VQGLHVCHDV STRGMLAPLP  60
RRKAKAGSLS GKSSRCKQHP SGSTPLARRL EKRCDADADA DSPKRATPRG RVRNVAARGC  120
RGLSPPPGSL PLGHLTARLL APPHEERRGW LPGRGALGWL GAGAFDGHGH DRRSGDKRCA  180
ATRTESAQNP SRPQRHITPQ IRPLHLLPAS GGAPPSPRHM ARPCAEADKV GTRRSALRPG  240
PSEIYIGGNA FRCRGQKYLL CGRVGVAPHR RRSRINPTPT PTAHTQSGAK QPKRKSQRLS  300
YPVLPPSCAR ALSRVRDTGS VCSSYLAVAS RALVAMGSEC YVQLQAKQQQ PPPAQAGAGA  360
IAPFVAKTYH MVSDPATDAV VCWGVASNTF LVLDPAAFSD YLLPSYFKHR NFASFVRQLN  420
TYGFRKVDAD RWEFAHESFL RGQTQLLPLI VRKRKKPGCR ELCDEGEEVR GTMKAVQRLR  480
EEQRGMDEEL QAMDRRLQAA ESRPGQMMTF LAKLADEPGA VLRAMLAKKE ELAEAGRKGS  540
TAPLEAPGKR RRIGGGEDCG AVAGGDAAEQ GMGAVQFPFS VLGQVFY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A9e-2735645312120Heat shock factor protein 1
5d5u_B9e-2735345318129Heat shock factor protein 1
5d5v_B9e-2735345318129Heat shock factor protein 1
5d5v_D9e-2735345318129Heat shock factor protein 1
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1451455RKRKK
2548552KRRRI
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00379DAPTransfer from AT3G24520Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00289.1.g00260.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0663161e-152AK066316.1 Oryza sativa Japonica Group cDNA clone:J013066G03, full insert sequence.
GenBankAY3444931e-152AY344493.1 Oryza sativa (japonica cultivar-group) heat shock factor RHSF11 mRNA, complete cds.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP112983141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24520.12e-55heat shock transcription factor C1