PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00281.1.g00430.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family Trihelix
Protein Properties Length: 1177aa    MW: 128083 Da    PI: 9.763
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00281.1.g00430.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix96.72e-30542626187
                      trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpy 81 
                                   rW+++e+laLi++r+em+ ++r++ lk+plWe+vs+k+++ g++rs+k+Ckek+en++k+yk++keg+ +r++++s  +++
  Zpz_sc00281.1.g00430.1.am.mk 542 RWPREETLALIRIRSEMDATFRDATLKGPLWEDVSRKLADLGYKRSAKKCKEKFENVHKYYKRTKEGRAGRQDGKS--YRF 620
                                   8*********************************************************************866665..*** PP

                      trihelix  82 fdqlea 87 
                                   f++lea
  Zpz_sc00281.1.g00430.1.am.mk 621 FSELEA 626
                                   ***985 PP
2trihelix1092.9e-349201005187
                      trihelix    1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstc 79  
                                    rW+k ev+aLi++r +m+ r++++  k+plWe++s+ mr+ g++rs+k+Ckekwen+nk+ykk+ke++kkr +e+s+tc
  Zpz_sc00281.1.g00430.1.am.mk  920 RWPKAEVHALIQLRMDMDMRYQETGPKGPLWEDISAGMRRLGYNRSSKRCKEKWENINKYYKKVKESNKKR-PEDSKTC 997 
                                    8*********************************************************************8.99***** PP

                      trihelix   80 pyfdqlea 87  
                                    pyf+qlea
  Zpz_sc00281.1.g00430.1.am.mk  998 PYFHQLEA 1005
                                    ******85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007173.3E-4539601IPR001005SANT/Myb domain
PROSITE profilePS500907.039541599IPR017877Myb-like domain
PfamPF138372.8E-21541627No hitNo description
CDDcd122031.22E-30541606No hitNo description
SMARTSM007170.0011917979IPR001005SANT/Myb domain
PfamPF138372.0E-239191006No hitNo description
CDDcd122033.53E-31919984No hitNo description
PROSITE profilePS500907.189919977IPR017877Myb-like domain
Sequence ? help Back to Top
Protein Sequence    Length: 1177 aa     Download sequence    Send to blast
MATLRCGGPT WFVPVRSVYV ERYIHRFLGI GFQRPSFCYE PAHHPTTLYR RVHLIVATVH  60
VALEPLHVAL SLSVHILPFS RSRPVATSVN RWYTITHHAQ RDDAWTREVS TRPCDMVNRL  120
LPAAAGARRE YTRTKTTRRA CIARRAKTRA MWPWRSRIRE RGRPGEEMEK EIIFLQYLQD  180
SKAADAVTMG EIDRWIDGRQ RQRHAGRGGT AGAPHAMHAA RDCVSRLQRG RRRCQRGPVV  240
RARAPHLGAA QGYVSVSRRV QSIHPKDPSI HPQPPRFINF PYLSTTSPGY KTGAASAVTD  300
SSGVDRRVAL SLTLSLGQAP SHYHQVTSGA RGVFACFFLP SSLALDPFQL STLPPIFFTI  360
SLSLSISLSL PSHPIPSPPC PPAGRSLPFP YFSSYKYAGT QGATRPAIQG LAFGCGCYPH  420
AASSSKNRRV AAAGKEKLKF NREEGELVAA PMQHQPQHQG SESPYGAAPP SMGPFSPPAA  480
SSAMPLSSRP PSSSQEQQQL TPSYEELTAV SEAGAGASFP DDEMLGGGSG GGGGSGTPGG  540
NRWPREETLA LIRIRSEMDA TFRDATLKGP LWEDVSRKLA DLGYKRSAKK CKEKFENVHK  600
YYKRTKEGRA GRQDGKSYRF FSELEALHAA APQPPASSAP QMHAFAAPVS AAPPMNPLPP  660
PAAGGPMQPA PISSAAPAPF ELPPPQPLNL QGLSFSSMSD SESDGESDDD DMTAETGGGQ  720
EQLGKRKRGG GGKKMMSFFE GLMQQVVERQ EEVQRRFLET MEKREAERTA REEAWRRQEV  780
ARLNREQDQL AQERAAAASR DATIIAFLQR IGGHSVQPPA AVIVPMSAHM TVQTPPPPPK  840
QPPRQQPTQA TPPPKPISAS PLQQQPPQQQ YKETSPQNIS TPRGAPPTPG SAASLELVPT  900
SEQHVDLALG GEGGAASSSR WPKAEVHALI QLRMDMDMRY QETGPKGPLW EDISAGMRRL  960
GYNRSSKRCK EKWENINKYY KKVKESNKKR PEDSKTCPYF HQLEAIYLKK QQSGGTAASS  1020
ANVVAAATTP AFTSQLNQSR QEIEGKNIND DKRNNGGSSG GGAQVPPSNG DPAPPLTAAL  1080
DVDSGTKKPE DIVRELTERP PRGVMTDETD SDDMGDEYTD DGEEGEDDGK MQYRIQFQSP  1140
NSGGNNSAPA PAPSTTTTPP GPASAPTTTN TFAAMVQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1584592KRSAKKCKE
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00281.1.g00430.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001344790.10.0uncharacterized LOC100279868 isoform 2
TrEMBLA0A1D6E4F10.0A0A1D6E4F1_MAIZE; GT-2-like 1
STRINGGRMZM2G016649_P030.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60638175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G33240.12e-39GT-2-like 1