PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc00278.1.g00310.1.am.mkhc | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 652aa MW: 72705.4 Da PI: 6.4474 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 58 | 1.6e-18 | 52 | 110 | 3 | 57 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 k ++t+eq+e+Le+l+ +++ps ++r++L +++ +++ +q+kvWFqNrR ++k+ Zpz_sc00278.1.g00310.1.am.mkhc 52 KYVRYTPEQVEVLERLYIDCPKPSSSRRQQLLRECpilaNIEPKQIKVWFQNRRCRDKQ 110 5678****************************************************996 PP | |||||||
2 | START | 39.7 | 1.2e-13 | 205 | 282 | 49 | 124 |
EEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EE CS START 49 rasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmvaelqalsplvp.RdfvfvRyirqlgagdwv 124 +a+ v m+ +++ e+l d++ W +++++ e+ g g+++l +++++a+++lvp Rdf+++Ry+ ++++g++v Zpz_sc00278.1.g00310.1.am.mkhc 205 TAIDWVQMPGMKVIEILKDRP-SWFRDCRSLEVFTMFPAGngGTIELVYMQMYAPTTLVPaRDFWTLRYTTTMEDGSLV 282 567789999996666666666.***********999999999******************************9999987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 15.289 | 47 | 111 | IPR001356 | Homeobox domain |
SMART | SM00389 | 5.3E-15 | 49 | 115 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 6.84E-16 | 51 | 113 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 3.11E-15 | 52 | 112 | No hit | No description |
Pfam | PF00046 | 4.5E-16 | 53 | 110 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.6E-17 | 54 | 110 | IPR009057 | Homeodomain-like |
CDD | cd14686 | 7.22E-6 | 104 | 143 | No hit | No description |
SuperFamily | SSF55961 | 6.73E-13 | 185 | 286 | No hit | No description |
Pfam | PF01852 | 2.3E-10 | 205 | 282 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 1.2E-5 | 216 | 285 | IPR023393 | START-like domain |
Pfam | PF08670 | 6.0E-31 | 555 | 651 | IPR013978 | MEKHLA |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008289 | Molecular Function | lipid binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 652 aa Download sequence Send to blast |
GRDLRQLLKV EVLGLLHWRE TDTLMAAAVA MRGGSSDSGG GFDKGPGMDS GKYVRYTPEQ 60 VEVLERLYID CPKPSSSRRQ QLLRECPILA NIEPKQIKVW FQNRRCRDKQ RKESSRLQAV 120 NRKLTAMNKL LMEENERLQK QVSQLVHENA HMRQQLQNTS LTNDTSCESN VTTPPNPIRD 180 ASNPSGLLSI AEETYTEFLS KATGTAIDWV QMPGMKVIEI LKDRPSWFRD CRSLEVFTMF 240 PAGNGGTIEL VYMQMYAPTT LVPARDFWTL RYTTTMEDGS LVAWSVPEVL RPLYESSSVV 300 AQKMTTVALR HLRQIAQETS GEVVYALGRQ PAVLRTFSQR LSRGFNDAIS GFNDDGWSIM 360 GGDGIEDVVV ACNSTKKIRN NNNVGITFGA PGGIICAKAS MLLQSVPPAV LVRFLREHRS 420 EWADYNIDAY LASALKASAC LLPGLRPMRF SGGQMILPLA HTVENEEILE VVRLEGQALT 480 HDEALLSRDI HLLQLCTGID EKSVGSSFQL VFAPIDEHFP DDAPLISSGF RVIPLDMKTR 540 VLSGFPEAAT LARWEKPMFT FANKAGLDML ETSLIALQDL TLDKIFDESG RKALFSDISK 600 LMEQGYVYLP SGVCMSGMGR HVSFDQAVAW KVLGEDSNVH CLAFCFVNWS FV |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc00278.1.g00310.1.am.mkhc |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY501430 | 0.0 | AY501430.1 Zea mays rolled leaf1 mRNA, complete cds. | |||
GenBank | BT066287 | 0.0 | BT066287.1 Zea mays full-length cDNA clone ZM_BFc0170B17 mRNA, complete cds. | |||
GenBank | KJ727606 | 0.0 | KJ727606.1 Zea mays clone pUT5466 HB transcription factor (HB133) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004986037.1 | 0.0 | homeobox-leucine zipper protein HOX10 | ||||
Swissprot | A2XBL9 | 0.0 | HOX10_ORYSI; Homeobox-leucine zipper protein HOX10 | ||||
TrEMBL | A0A3L6DGP7 | 0.0 | A0A3L6DGP7_MAIZE; Homeobox-leucine zipper protein HOX10 | ||||
STRING | Si034251m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP374 | 38 | 197 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60690.1 | 0.0 | HD-ZIP family protein |