PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00278.1.g00290.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family NAC
Protein Properties Length: 407aa    MW: 45254.9 Da    PI: 8.3752
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00278.1.g00290.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM154.64.3e-48101571128
                           NAM   1 lppGfrFhPtdeelvveyLkkkvegkklelee.............vikevdiykvePwdLpkkvkaeek.ewyfFskrdkk 67 
                                   lppGfrFhP+deelv++yL++kv++++ + ++              + evd++ +ePwdLp+++k +++ ewyfFs+rd+k
  Zpz_sc00278.1.g00290.1.am.mk  10 LPPGFRFHPSDEELVCYYLRPKVAATSSSSHDqliavslspatsmLLVEVDLHVCEPWDLPEAAKLGDRqEWYFFSRRDQK 90 
                                   79**********************99955544566777778887569**************655555444*********** PP

                           NAM  68 yatgkrknratksgyWkatgkdkevlsk....kgel....vglkktLvfykgrapkgektdWvmheyrl 128
                                   yatg+r+nrat +gyWk tgkdk v+++    +       vg++ktLvfy grap+g+k+dWvmhe+rl
  Zpz_sc00278.1.g00290.1.am.mk  91 YATGTRTNRATPHGYWKVTGKDKVVHDRdehgN--GtmmvVGTRKTLVFYLGRAPNGRKSDWVMHEFRL 157
                                   **************************9865541..15566***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.31E-548188IPR003441NAC domain
PROSITE profilePS5100554.70510188IPR003441NAC domain
PfamPF023652.5E-2711157IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MRLRDIESSL PPGFRFHPSD EELVCYYLRP KVAATSSSSH DQLIAVSLSP ATSMLLVEVD  60
LHVCEPWDLP EAAKLGDRQE WYFFSRRDQK YATGTRTNRA TPHGYWKVTG KDKVVHDRDE  120
HGNGTMMVVG TRKTLVFYLG RAPNGRKSDW VMHEFRLGAA SCSSTSAASA MTPPQMEQDW  180
VLCRVFHKGK GEADNGGSSN VDMIASSSTG SSRLPALCSP PQPAHNLDGG RLFPTSVGSY  240
SSSPTIIIIS SGQQLVMDSD DHGVVTGQYL DAPTPAPAMI QQHAAAGDAV VAGSSAQPMD  300
TQGYGENVMR EMETMMSLQP DQSPPRRQRN DDDRFELTNS NRMQQAGQSE HRLRRGRGRG  360
MKGSCEWQLV LRRWASADIR IRIRIRMMEA WVLRREDSRA EQSKAVR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A3e-42918819168NAC domain-containing protein 19
3swm_B3e-42918819168NAC domain-containing protein 19
3swm_C3e-42918819168NAC domain-containing protein 19
3swm_D3e-42918819168NAC domain-containing protein 19
3swp_A3e-42918819168NAC domain-containing protein 19
3swp_B3e-42918819168NAC domain-containing protein 19
3swp_C3e-42918819168NAC domain-containing protein 19
3swp_D3e-42918819168NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00278.1.g00290.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0D9VNG41e-66A0A0D9VNG4_9ORYZ; Uncharacterized protein
STRINGLPERR03G00700.12e-67(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2552745
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28530.12e-62NAC domain containing protein 74