PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc00275.1.g00410.1.am.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

Trihelix

Protein Properties

Length: 424aa MW: 45047.1 Da PI: 6.4009

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc00275.1.g00410.1.am.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	28.2	5e-09	162	240	1	70
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.........rergferspkqCkekwenlnkrykkikegekk 70 +Wt e+laL++ + +++ +r+ ++ ++W+ v++++ + +r + +Ck +we l+ +y +++++e + Zpz_sc00275.1.g00410.1.am.mk 162 EWTPAETLALVAEVAAVDDGWSRSVSAFQKWAMVAENLaasevfasgPALRGKRAAGECKRRWEALAAEYGAVRRWEVR 240 5*****************************************98888888*********************9976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	6.679	163	228	IPR017877	Myb-like domain

Sequence ? help Back to Top
Protein Sequence Length: 424 aa Download sequence Send to blast
MASMQRASQR SRSPPVWGPP LSRPASDTTS ARDPQGSTWL RTRAPRRTRT VSTLARASSS 60 LPHRLTAPAP AHRIAPASMD PPAADSRCVV QALRASSNTR PAPPPPIKSL HSPAAKDHAP 120 GASSSSSRPP KPKRRLPRPT ALPLGPAPPS PRRTRSGGSA PEWTPAETLA LVAEVAAVDD 180 GWSRSVSAFQ KWAMVAENLA ASEVFASGPA LRGKRAAGEC KRRWEALAAE YGAVRRWEVR 240 TGGGYWKMST AARRKAGLPS EFDAEVYGTM DALVRVEEAL LANAVAGGGA GEEVEGLVGS 300 GAGVAVGEEN RGEPEICKEQ VKKDELVDEV QKDESGDEEE DEDGRDDEEA TKADPGNADA 360 SNTIEASKYA DENHTPSYSL SPDAMGTTRQ KADDLIKSLG GLLSYLNQFT ELIKETGFEN 420 VGMT

Sequence ? help Back to Top

Protein Sequence Length: 424 aa Download sequence Send to blast

MASMQRASQR SRSPPVWGPP LSRPASDTTS ARDPQGSTWL RTRAPRRTRT VSTLARASSS  60
LPHRLTAPAP AHRIAPASMD PPAADSRCVV QALRASSNTR PAPPPPIKSL HSPAAKDHAP  120
GASSSSSRPP KPKRRLPRPT ALPLGPAPPS PRRTRSGGSA PEWTPAETLA LVAEVAAVDD  180
GWSRSVSAFQ KWAMVAENLA ASEVFASGPA LRGKRAAGEC KRRWEALAAE YGAVRRWEVR  240
TGGGYWKMST AARRKAGLPS EFDAEVYGTM DALVRVEEAL LANAVAGGGA GEEVEGLVGS  300
GAGVAVGEEN RGEPEICKEQ VKKDELVDEV QKDESGDEEE DEDGRDDEEA TKADPGNADA  360
SNTIEASKYA DENHTPSYSL SPDAMGTTRQ KADDLIKSLG GLLSYLNQFT ELIKETGFEN  420
VGMT

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc00275.1.g00410.1.am.mk

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012701598.1	1e-105	trihelix transcription factor ASR3
TrEMBL	A0A368PHJ7	1e-104	A0A368PHJ7_SETIT; Uncharacterized protein
STRING	Sb04g004960.1	1e-104	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6353	24	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G31270.1	2e-15	sequence-specific DNA binding transcription factors