PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00275.1.g00360.1.sm.mkhc
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bZIP
Protein Properties Length: 307aa    MW: 32487.9 Da    PI: 5.177
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00275.1.g00360.1.sm.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_152.97.7e-17137188455
                                     XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                          bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkke 55 
                                     +kr +r+ +NRe+ArrsR+RK+a ++eLe+ v++L +eN +L k+l   +++
  Zpz_sc00275.1.g00360.1.sm.mkhc 137 VKRMKRMVSNRESARRSRKRKQAHLAELETQVDQLRGENASLFKQLTDANNQ 188
                                     79****************************************9877666555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003389.3E-18134198IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.105136188IPR004827Basic-leucine zipper domain
PfamPF001701.3E-14137188IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.06E-12137189No hitNo description
Gene3DG3DSA:1.20.5.1701.7E-13138189No hitNo description
CDDcd147025.02E-23139189No hitNo description
PROSITE patternPS000360141156IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0071333Biological Processcellular response to glucose stimulus
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MKKCPSELEL EAFIGGGVDG DAEQKPGHVS QFDAGVMFQA GGGDLSAFSF ADSNTLNGTI  60
PSHLWSHNHG GARHPAISTT IESQSSICAA ASPISATNLN VKESQTLGGT SGSDSDSDSL  120
FDTEGGPCEQ STNPLDVKRM KRMVSNRESA RRSRKRKQAH LAELETQVDQ LRGENASLFK  180
QLTDANNQFT TAVTDNRILK SDVEALRLKV KLAEDMVARG AVSCGLGHMS LSPVLNPRQA  240
CRGPDVLAGL DFPGDDAYLT GLSPTEQVQN SPLQSIDNRM ASEVTSCGGA GVDVWGWDSH  300
SNGGLSK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1150156RRSRKRK
2150157RRSRKRKQ
3152157SRKRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that possesses broad binding specificity for DNA promoter elements with the core sequence 5'-ACGT-3'. May be involved in the regulation of genes expressed during seed development (PubMed:7919992). Binds to the DNA specific sequence 5'-TGAGTCA-3' found in seed storage protein gene promoters (PubMed:11133985). {ECO:0000269|PubMed:11133985, ECO:0000269|PubMed:7919992}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00275.1.g00360.1.sm.mkhc
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1210901e-151EF121090.2 Zoysia japonica clone GB-ZJM-095 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021315644.11e-175basic leucine zipper 9-like isoform X1
SwissprotQ6ETX01e-138RSBZ3_ORYSJ; bZIP transcription factor RISBZ3
TrEMBLA0A194YMZ41e-174A0A194YMZ4_SORBI; Uncharacterized protein
STRINGSb04g005020.11e-175(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20953796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24800.12e-40basic leucine zipper 9
Publications ? help Back to Top
  1. Onodera Y,Suzuki A,Wu CY,Washida H,Takaiwa F
    A rice functional transcriptional activator, RISBZ1, responsible for endosperm-specific expression of storage protein genes through GCN4 motif.
    J. Biol. Chem., 2001. 276(17): p. 14139-52
    [PMID:11133985]
  2. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  3. Izawa T,Foster R,Nakajima M,Shimamoto K,Chua NH
    The rice bZIP transcriptional activator RITA-1 is highly expressed during seed development.
    Plant Cell, 1994. 6(9): p. 1277-87
    [PMID:7919992]