PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00266.1.g00100.1.sm.mkhc
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ARF
Protein Properties Length: 692aa    MW: 74642.3 Da    PI: 6.849
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00266.1.g00100.1.sm.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3741.8e-23121222199
                                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHH CS
                              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkan 72 
                                     f k+lt+sd+++ g +++p+ +ae++         ++ +  t++ +d +g  W++++iyr++++r++lt+GW+ Fv+ +
  Zpz_sc00266.1.g00100.1.sm.mkhc 121 FAKTLTQSDANNGGGFSVPRYCAETIfppldyaADPPVQ--TVVAKDVHGAAWKFRHIYRGTPRRHLLTTGWSTFVNNK 197
                                     89*****************************96555555..8************************************* PP

                                     T--TT-EEEEEE-SSSEE..EEEEE-S CS
                              B3  73 gLkegDfvvFkldgrsefelvvkvfrk 99 
                                     +L +gD++vF   + +++ l+v+++r+
  Zpz_sc00266.1.g00100.1.sm.mkhc 198 KLVAGDSIVFL--RGDGGDLHVGIRRA 222
                                     ***********..3488999*****97 PP
2Auxin_resp115.45.2e-38271354183
                      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSk 78 
                                     aa+ as++++FevvY+Prast+eF+v ++ v++a++v++s+GmRfkmafetedss++++ +Gtv+gv+ +dpvrWp+S+
  Zpz_sc00266.1.g00100.1.sm.mkhc 271 AARLASSGQAFEVVYYPRASTPEFCVGAAAVRAAMRVQWSPGMRFKMAFETEDSSRISWfMGTVAGVQVTDPVRWPQSP 349
                                     68899************************************************************************** PP

                      Auxin_resp  79 WrsLk 83 
                                     Wr+L+
  Zpz_sc00266.1.g00100.1.sm.mkhc 350 WRLLQ 354
                                     ***97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.6E-37116224IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.09E-28118223IPR015300DNA-binding pseudobarrel domain
CDDcd100176.50E-22120221No hitNo description
PROSITE profilePS5086312.802121223IPR003340B3 DNA binding domain
PfamPF023621.8E-21121222IPR003340B3 DNA binding domain
SMARTSM010194.8E-21121223IPR003340B3 DNA binding domain
PfamPF065074.4E-33271354IPR010525Auxin response factor
PROSITE profilePS5174512.013610686IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007389Biological Processpattern specification process
GO:0009733Biological Processresponse to auxin
GO:0048829Biological Processroot cap development
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 692 aa     Download sequence    Send to blast
MITFADLTAP APAGAERCVD RQLWLACAGG MCTVPPVGAS VYYFPQGHAE HAVGLSGTVD  60
LSTARVPALV PCRVAAVRYM ADPDTDEVFA RIRLVPLRGV EADAGLDDDS AVDEPEKPAS  120
FAKTLTQSDA NNGGGFSVPR YCAETIFPPL DYAADPPVQT VVAKDVHGAA WKFRHIYRGT  180
PRRHLLTTGW STFVNNKKLV AGDSIVFLRG DGGDLHVGIR RAKRGFCGAG GAEEAPVAGW  240
DPYAGLMRGN ATPCGAAKAR AKVRPEDVVE AARLASSGQA FEVVYYPRAS TPEFCVGAAA  300
VRAAMRVQWS PGMRFKMAFE TEDSSRISWF MGTVAGVQVT DPVRWPQSPW RLLQVNWDEP  360
DLLQNVKRVN PWLVELVSSI PAIHLASFSP PRKKPRPAYP EFPFEGQLLN PAFPPNPLAH  420
GHPPHHHFLH PHPPFFPFPD GSAPAAIQGA RHAQFVPFLS DLHFTNLQSS LLYPGLRRPD  480
HVGPTTPIPP RINTDLTICG SPPRDDVSCA LSIGTNNKKT DAVKPAGIML FGQTILTEQQ  540
MSLSSSGGAT SPVATRTSSL NWNTEKGGIV SEGSGSGVIQ NSPTNKASSE RHWFMDGSSH  600
LSESEPGLEQ GQCKVFMESE TVGRDLDVSS LRSFDELYDR LSEMFGIDSA DLRSRVLCRG  660
ATGEVKHAGD EPFRSARRVT ILTDAGSDNL GS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A3e-791937551388Auxin response factor 5
4ldy_A2e-792137921357Auxin response factor 1
4ldy_B2e-792137921357Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00461DAPTransfer from AT4G30080Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00266.1.g00100.1.sm.mkhc
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004953169.10.0auxin response factor 8
SwissprotQ6K2230.0ARFH_ORYSJ; Auxin response factor 8
TrEMBLA0A368PP630.0A0A368PP63_SETIT; Auxin response factor
STRINGSi016509m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51637152
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16