PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00264.1.g00470.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GRAS
Protein Properties Length: 653aa    MW: 69996.2 Da    PI: 6.1406
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00264.1.g00470.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS301.12.8e-922106051373
                          GRAS   1 lvelLlecAeavss..gdlelaqalLarlselaspdgd......pmqRlaayfteALaarlarsvs..elykalppsetse 71 
                                   l +lL+++Aea+s   ++ ela+ +L rl+e++s +g       +m+Rlaa+ft AL+  l +s +  + +k  ++ + ++
  Zpz_sc00264.1.g00470.1.am.mk 210 LLHLLMAAAEALSGphKSRELARVILVRLKEMVSHTGAtnapasNMERLAAHFTDALQGLLDGSHPvgTASKHAATAAPHQ 290
                                   579**********8557777***************9965888889*****************9655214555556666666 PP

                          GRAS  72 knsseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgsp 150
                                   ++  ++l+a+++++++sP++kf+h+taNqaIleav+g++rvH++D+di +G+QW++L+qa+ sRp   +pp+lRiT+v ++
  Zpz_sc00264.1.g00470.1.am.mk 291 HHRGDVLTAFQMLQDMSPYMKFGHFTANQAILEAVAGDRRVHVVDYDIAEGVQWASLMQAMISRPdgVPPPHLRITAVLRN 371
                                   6799*************************************************************777799*********8 PP

                          GRAS 151 esgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklv 231
                                     g +++++e+g+rLa fA++++ pf+f     ++ + ++  + r+ +gEal+ n+vl+          ++    ++L  +
  Zpz_sc00264.1.g00470.1.am.mk 372 GGGGARAVQEVGRRLAAFAASIRQPFSFGQCRIDSEDRFRSATVRMVKGEALVANCVLNQAAATTTVRRSTGSVASFLAGM 452
                                   888***************************9999999*********************887776555555557999***** PP

                          GRAS 232 kslsPkvvvvveqe.adhnse..........sFlerflealeyysalfdsleaklpreseerikvErellgreivnvvace 301
                                    +l +k+v+vve++  d ++e           F++rf+e l+ ysa+ dslea++p++s+ r  vEr++l+++i  +v+ +
  Zpz_sc00264.1.g00470.1.am.mk 453 ATLGAKLVTVVEEDrGDAEKEddeggdaaagGFVARFMEELHRYSAVWDSLEAGFPTQSRVRGLVERVILAPNIAGAVSRA 533
                                   *************953333335678889999************************************************** PP

                          GRAS 302 gaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveees.gslvlgWkdrpLvsvSaW 373
                                    ++   + e  + W e+++  GF++vpls ++ +qa+lll  ++ dgy++ee s + +vlgWk r+L+s+S+W
  Zpz_sc00264.1.g00470.1.am.mk 534 FRAVDGDGEARGGWGEWMRGNGFRAVPLSCFNHSQARLLLGLFN-DGYTIEETSpNKIVLGWKARRLLSASVW 605
                                   ********************************************.******88626777************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098548.484184586IPR005202Transcription factor GRAS
PfamPF035149.6E-90210605IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 653 aa     Download sequence    Send to blast
MDKCGDAFDF SNSPRQCRCV GVPAPVRLAE SFVYISKPLS CVLPSSAQIP APSLPTDRSP  60
LSPRAKTFPD SKPKQSHRTR TGINQASTME VTMDDVAGEL EFSGCSSTTT SCSHEAWNSL  120
SPVAEWGPFC RDDCGKDLHG LIEAMLCDGT LVGAAVDDDY DSIHPAMFFR EEACYYSNGS  180
VPSSTTTMNP GTPVYDVDAQ GDCPEKGLRL LHLLMAAAEA LSGPHKSREL ARVILVRLKE  240
MVSHTGATNA PASNMERLAA HFTDALQGLL DGSHPVGTAS KHAATAAPHQ HHRGDVLTAF  300
QMLQDMSPYM KFGHFTANQA ILEAVAGDRR VHVVDYDIAE GVQWASLMQA MISRPDGVPP  360
PHLRITAVLR NGGGGARAVQ EVGRRLAAFA ASIRQPFSFG QCRIDSEDRF RSATVRMVKG  420
EALVANCVLN QAAATTTVRR STGSVASFLA GMATLGAKLV TVVEEDRGDA EKEDDEGGDA  480
AAGGFVARFM EELHRYSAVW DSLEAGFPTQ SRVRGLVERV ILAPNIAGAV SRAFRAVDGD  540
GEARGGWGEW MRGNGFRAVP LSCFNHSQAR LLLGLFNDGY TIEETSPNKI VLGWKARRLL  600
SASVWAPPPM SVPSSPPEGV LQSVVMAPVS GGVGRMEFDY IDSFLAEPAY ALV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-4921860727380Protein SCARECROW
5b3h_A2e-4921860726379Protein SCARECROW
5b3h_D2e-4921860726379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator essential for Nod-factor-induced gene expression. Acts downstream of calcium spiking and DMI3, a calcium/calmodulin-dependent protein kinase (CCaMK). {ECO:0000269|PubMed:15961668}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00264.1.g00470.1.am.mk
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced 24 hours after treatment with Nod factor or Sinorhizobium meliloti. {ECO:0000269|PubMed:15961668}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002468140.20.0nodulation-signaling pathway 2 protein
SwissprotQ5NE241e-151NSP2_MEDTR; Nodulation-signaling pathway 2 protein
TrEMBLA0A1E5V8410.0A0A1E5V841_9POAL; Nodulation-signaling pathway 2 protein
STRINGSb01g040270.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP75803148
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.11e-105GRAS family protein
Publications ? help Back to Top
  1. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]