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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc00259.1.g00410.1.es.mkhc | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | CAMTA | ||||||||
Protein Properties | Length: 655aa MW: 73674.9 Da PI: 5.0982 | ||||||||
Description | CAMTA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CG-1 | 178.8 | 6.6e-56 | 6 | 121 | 2 | 116 |
CG-1 2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggve 79 lke ++rwl++ ei++iL+n+++++++ e+++rp+sgsl+L++rk++ryfrkDG++w+kk+dgktv+E+he+LK g+v+ Zpz_sc00259.1.g00410.1.es.mkhc 6 LKEaQHRWLRPAEICEILKNYRNFQIAPEPPNRPPSGSLFLFDRKVLRYFRKDGHNWRKKRDGKTVKEAHERLKSGSVD 84 45559************************************************************************** PP CG-1 80 vlycyYahseenptfqrrcywlLeeelekivlvhyle 116 vl+cyYah+een++fqrr+yw+Lee++ +ivlvhyle Zpz_sc00259.1.g00410.1.es.mkhc 85 VLHCYYAHGEENENFQRRSYWMLEEDFMHIVLVHYLE 121 ***********************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51437 | 83.278 | 2 | 128 | IPR005559 | CG-1 DNA-binding domain |
SMART | SM01076 | 1.6E-77 | 5 | 123 | IPR005559 | CG-1 DNA-binding domain |
Pfam | PF03859 | 5.8E-50 | 8 | 121 | IPR005559 | CG-1 DNA-binding domain |
Gene3D | G3DSA:2.60.40.10 | 1.9E-4 | 431 | 515 | IPR013783 | Immunoglobulin-like fold |
SuperFamily | SSF81296 | 1.07E-15 | 431 | 516 | IPR014756 | Immunoglobulin E-set |
Pfam | PF01833 | 7.5E-6 | 436 | 508 | IPR002909 | IPT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 655 aa Download sequence Send to blast |
DVQQILKEAQ HRWLRPAEIC EILKNYRNFQ IAPEPPNRPP SGSLFLFDRK VLRYFRKDGH 60 NWRKKRDGKT VKEAHERLKS GSVDVLHCYY AHGEENENFQ RRSYWMLEED FMHIVLVHYL 120 ELKGGKSSSR IRHDNMLQAS HTDNPLSHLP SQTTEGESSL SGQASEYEET ELDIYSGGTG 180 YNPFSWMQQH ENGGGPVIGS SILSSYIPEP SASYQQGLPA MTANTSFYSH GEDHLAVFRD 240 VSCQIAFNGA DSQMNLSSLN GVTKPDNGIH HMSLPQVSIQ REQIPFTEGP GIESFTFDEV 300 YSNELSVKDA DGAGTDEGSL WQLSGLGGSF FTEDNFQQNQ RSWEKAINYP LLKSQSSNLS 360 DILKDSFKKS DIFTRWMTKE LGEVDDSQIS SSSGVNWNNE DADTIIEATS HDQLDQFTVG 420 PVLAQDQLFS IFDFAPGWTY AGSKTSVLIA GRFLNPNEVK SCKWSCMFGE VEVPAHITAD 480 ETLGCYSPSH KPGRVPFYVT CSNRLACSEV REFEFRPITS QYMDAPSPHG ATNKTYLQTR 540 LDKLVSLRQD EYHAVVGNPT KERIDLSKKI NSLIMDNDKW SESLKLAGDY EISTDDKQDQ 600 LFENCINEKM HIWLVHKAGS NGKGPSVLDD EGQGVLHLAA ALGYDWVIRP TITVV |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc00259.1.g00410.1.es.mkhc |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004985393.1 | 0.0 | calmodulin-binding transcription activator 3 isoform X2 | ||||
TrEMBL | A0A368SUT7 | 0.0 | A0A368SUT7_SETIT; Uncharacterized protein | ||||
STRING | GRMZM2G447551_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP608 | 38 | 140 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22300.2 | 1e-144 | signal responsive 1 |