PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00246.1.g00030.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 608aa    MW: 66356 Da    PI: 9.7508
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00246.1.g00030.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.84.6e-14384435155
                                   CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                           HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                   +r++h ++Er+RR+++N+ ++ Lr+l+P++   ++ + + a+i+  A++Y+++L+
  Zpz_sc00246.1.g00030.1.am.mk 384 QRMTHIAVERNRRRQMNEHLAVLRSLMPPS---YAHRGDQASIVGGAINYVRELE 435
                                   79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.13E-14382439No hitNo description
PROSITE profilePS5088815.859383434IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.84E-17383449IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.8E-14383439IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.4E-11384435IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-10389440IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 608 aa     Download sequence    Send to blast
MVRFHQLDEA TNQAVTPGIT RITCPPQLGR DKENEETDDY AMNFKLNANF QRYRRTVKST  60
VAVDPAIPMS VTTPWPCTRS WSWTNRETGS PGPGDWHPPQ PSCGAESMDL HACFDHSAVA  120
AYKKLRPYNH LQATPRSFSN LPTTPSVRGV PAHLGRWGPL SQQRTTERDH PTASQITILR  180
QAWATPHANT PSFYSLCKSW PGPSPKAQNP ARGCRVRVRL TRDSRLIKRG VARQPGEHAH  240
TRRSPTRLLL ASCPWACSLV THHKVSCVRV RGRLLAMALE AVVFSQAGAG HFGYGRVDSP  300
YAMPWCDLPG ATGFGFGGDW GYDGLLASVA PDGADEWETA SAKQDQSSEA SAVGKGTAEP  360
AAAAGRRKRR RAKVVKNKEE IETQRMTHIA VERNRRRQMN EHLAVLRSLM PPSYAHRGDQ  420
ASIVGGAINY VRELEQLLQS LEVQKSIKNR DAGCSCTDAA GKSPFAGFFT FPQYSTSSSH  480
AGCAAAATSS NNTSNVANGK AAGSGASGDR APAVADIEVT MVEGHASLKV LVPRRPKQLL  540
KLVAGLQHLR VPPLHLNVTS VDAMVLYTFS LKVEDDSKMG SVEDIATAVH EILSRIRRQE  600
VEEETAVM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1366370RKRRR
2384395RMTHIAVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00246.1.g00030.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0420301e-108BT042030.1 Zea mays full-length cDNA clone ZM_BFb0114I01 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025796362.11e-129transcription factor bHLH94-like
TrEMBLA0A0A9F3U91e-137A0A0A9F3U9_ARUDO; Uncharacterized protein
STRINGPavir.J40759.1.p1e-128(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74138156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.11e-60bHLH family protein