PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00244.1.g00010.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family WRKY
Protein Properties Length: 305aa    MW: 33499.4 Da    PI: 4.8668
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00244.1.g00010.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY79.43.8e-25104165159
                                   ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                          WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                                   ++Dg++WrKYGqKe+++s+fpr Y rCt++   gC ++++v++s+ dp+v  itY geH+++
  Zpz_sc00244.1.g00010.1.am.mk 104 MEDGHAWRKYGQKEIRDSKFPRLYVRCTYKedqGCLARRRVQQSDADPSVYLITYFGEHTCS 165
                                   58***************************99999**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081120.43899167IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.0E-2399165IPR003657WRKY domain
SuperFamilySSF1182902.75E-23100166IPR003657WRKY domain
SMARTSM007745.4E-36104166IPR003657WRKY domain
PfamPF031061.7E-23105164IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MAMATKPASA ASELIAKGRD STAVLQAILG QQSAAVAEMP DGIWELTEQI IRCCDRALAA  60
LQEGAASGAK KREPEEHVMD APRSKRMRVS DGERGITVEK KWTMEDGHAW RKYGQKEIRD  120
SKFPRLYVRC TYKEDQGCLA RRRVQQSDAD PSVYLITYFG EHTCSCSRDT DEPPASLVIN  180
FGSGRTRDGQ LPSGCSPWPS CDDDGLVVSE TSSEICGLSE GDDLRPDKDN VAEQREHSTP  240
VPPPKPEGMS LPEWEPLDGF LDWELWDDKI SHCQPRPHIP MPVSEARAAA DGSTRSSVSG  300
GVLRG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A7e-22104164868OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00244.1.g00010.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004980734.12e-79probable WRKY transcription factor 63
TrEMBLA0A368S9A75e-78A0A368S9A7_SETIT; Uncharacterized protein
STRINGPavir.J07662.1.p4e-76(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP46632667
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.11e-23WRKY DNA-binding protein 70